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<h3>
Pierre Gruet pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/sepp">Debian Med / sepp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/06e3158edcbdc9dd453e847e2605095a4558557e">06e3158e</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:22:27+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.5.1+really4.5.1+dfsg</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#eff4cd4a1e08155d42c85e48787c9e4c288b8d02">
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.coveragerc
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#c42acb496cffcd06b599699e4ab23a959345a34f">
README.SEPP.md
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<li class="file-stats">
<a href="#96eba0d32c6e009fd44d232fc6d9db4b379d1234">
<span class="deleted-file">
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README.TIPP.md
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<a href="#ce6c81ff32edebf71116a3c16352eb4562def454">
README.UPP.md
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#f4c49cd230fa1c3147e2e211e68f96a3a0d748e5">
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run_abundance.py
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<a href="#53e07328f6d1c1ff723164abddbc2f26166b7e21">
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run_tipp.py
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run_tipp_tool.py
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sepp-package/sepp/README.TIPP.md
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sepp-package/sepp/run_abundance.py
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sepp-package/sepp/run_tipp.py
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<a href="#6a2d3903ceaeb0aaffb1a4a2841893ea88b52e3b">
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sepp-package/sepp/run_tipp_tool.py
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sepp-package/sepp/sepp/exhaustive.py
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<a href="#0e73590cf2f0f1b5f6912882e9ef5bb654c80956">
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sepp-package/sepp/sepp/metagenomics.py
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<a href="#bc9a7ad18d85a7ed7cc9bb6060820697d0c95c61">
sepp/__init__.py
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<a href="#a3bbd16a8c13b6df767fd425046c3bcf036c12f4">
sepp/algorithm.py
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<a href="#6def189afc1d8f73432c36202b14000bae7af035">
sepp/alignment.py
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<a href="#9741e2d80281a8ce37e2f6562fb69e5bffb97443">
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sepp/backtranslate.py
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<li class="file-stats">
<a href="#7735fddeea0b3f6f13d9b99794dc345232e222ec">
sepp/checkpointing.py
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<a href="#c4c3e8d24485a48c0b42292c52cd306503197910">
sepp/config.py
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<li class="file-stats">
<a href="#42f24cfebf4c94b7417dc09ad25e4bf9dd9be8fb">
sepp/decompose_tree.py
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<a href="#af9bc409a762bd1fbd758e9ce62e4740e1492ced">
sepp/ensemble.py
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<a href="#4ec310fecb57437434be1040295132cf01834425">
sepp/exhaustive.py
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sepp/exhaustive_tipp.py
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<a href="#e55d8010eabd6aedb0dcf9d3ffffd78c9556d8ff">
sepp/exhaustive_upp.py
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<a href="#ded6edb965ef7c57d593abc795708582cff1130a">
sepp/filemgr.py
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<a href="#c3e42d7fc86952a19479d701f3b148314a20b02d">
sepp/jobs.py
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<li class="file-stats">
<a href="#bf0e61de989af1ad7ceff815331f8000f6cd85cb">
sepp/math_utils.py
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<h5>The diff was not included because it is too large.</h5>
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