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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/sepp">Debian Med / sepp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/b925bd9e965fbc2b399f86604ee4c8125f05ab2b">b925bd9e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:07:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.5.1+really4.3.10+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/cacba6f07656229ebeefaa5ac4514fdbe9905fde">cacba6f0</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:07:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/4.5.1+really4.3.10+dfsg'
Update to upstream version '4.5.1+really4.3.10+dfsg'
with Debian dir 53e27a7e0620f20fc346af0dee9d11ede8840338</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/0d15e56583173ec7882d58a4907a540bb969cd20">0d15e565</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:08:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Adding d/sepp.maintscript to remove /etc/sepp/tipp/config, gone in tipp source package"
This reverts commit 8a2491a35a8e05bf32860f98f53cc196d90508c4.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/0b770f16b9374c8fae8360c8cf91b3283496cb00">0b770f16</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:09:14+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Refreshing manpages of run-sepp.py and run_sepp.py"
This reverts commit 6a53c852e9013c3c396ac0c57bd2c698e51acd96.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/b7059fd263b927859fd0dd02e4a2f9cab8bb48ec">b7059fd2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:09:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Using the Debian path of hmmbuild in the test testUPP"
This reverts commit 2a9d4b7eb31efbc8eb11b02490fb62551aa58c84.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/548f0a82a3d7a71b8557779986ce3c8fc94ebded">548f0a82</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:12:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Refreshing patches, deleting 3 upstreamed ones"
This reverts commit f951b94361db1998cb9c1f01c73ad49da0dff74a.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/da8ea50f0805b1d96f8259099230325f0b90644d">da8ea50f</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:15:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "tipp is now shipped in a different source package"
This reverts commit 18481475d9b59a8fc200521e622011e6831659ea.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/6cdef168b106499c97f4729dfb0712c2ffabdd03">6cdef168</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:20:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/f1e861981aabdb46391a5ff71c14e0a75beac7a3">f1e86198</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:46:41+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Correcting a wrong revert
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/44282b6e729ba78faa5e4ba53895525c4db3763d">44282b6e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T08:47:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/1d4a74a1414844a3dc5bad341377ae9892c3f0eb">1d4a74a1</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T10:57:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#eff4cd4a1e08155d42c85e48787c9e4c288b8d02">
<span class="deleted-file">
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.coveragerc
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</a>
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
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<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#c42acb496cffcd06b599699e4ab23a959345a34f">
README.SEPP.md
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<li class="file-stats">
<a href="#96eba0d32c6e009fd44d232fc6d9db4b379d1234">
<span class="new-file">
+
README.TIPP.md
</span>
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</li>
<li class="file-stats">
<a href="#ce6c81ff32edebf71116a3c16352eb4562def454">
README.UPP.md
</a>
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#f168b81935360ddcf2dd0f2d4b98b8603829060f">
debian/README.Debian
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<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
debian/README.source
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
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<li class="file-stats">
<a href="#97d1ef36b5d0b6d33012897bd58c4b0d9fbd4c3e">
debian/man/run-sepp.sh.1
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<li class="file-stats">
<a href="#e705f9c0b5d0a2a928ec403c9867eb9f3c90ae9a">
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debian/man/run_abundance.py.1
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<li class="file-stats">
<a href="#3478ac7e366d3400eb723ca169ed100babf034f5">
debian/man/run_sepp.py.1
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<li class="file-stats">
<a href="#3410c7cb3f54c55cbccdb8139f0e943f18023a2a">
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debian/man/run_tipp.py.1
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<a href="#081912cd59d7da5c7ef903dd7b2839c5fb721ad3">
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debian/man/run_tipp_tool.py.1
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<a href="#ca13c5da842c9c77dd19d666915c7a61726b1901">
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debian/man/tipp.config.5
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<a href="#8a5501661d0634356baa31697665b72b16f41f4d">
debian/patches/change_java_version_for_ant.patch
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<a href="#46407b1326bdee026280065f20152516ad775d7c">
debian/patches/configuration_files_in_etc_and_per_user.patch
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<a href="#c7ac154ea78b0726c974928302e250aedcc397d4">
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debian/patches/hmmbuild_path_for_testUPP.patch
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<a href="#3376dba004c17b9d80d1885abdb0f45aee93c34c">
debian/patches/java_build.patch
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debian/patches/json_collections.patch
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debian/patches/looking_for_integer_in_placements.patch
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debian/patches/make_split_sequences_script.patch
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debian/patches/series
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<a href="#baf09939cda3fe56aa57fe83e167d8594afc7d6b">
debian/patches/setup.patch
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<a href="#0fb2ebdf1422ca07aa40555402a7793da21fdefa">
debian/patches/use_debian_packaged_guppy_from_pplacer.patch
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<a href="#5195dfcbc4531eb22a425088ba787f0171b4c19a">
debian/patches/using_python3_interpreter.patch
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h5>The diff was not included because it is too large.</h5>
</div>
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