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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/beast-mcmc">Debian Med / beast-mcmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/e1e42ab6fcaf9e988796a388e3b61afb2e1370b2">e1e42ab6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:45:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/4f799e43062b0e0fa38597bbb1fb5523c21d19cb">4f799e43</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:46:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/3ed76eb4c37c0ded03cfd30439aa4e8bfae43c07">3ed76eb4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:46:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/4d4d1ce1033d218c8b8ec82de44069c8ac7e91b8">4d4d1ce1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:46:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/ee1d50413e3433a5ffb8f2d12fc854c34422fb8f">ee1d5041</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:46:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/a0dca52630c75b54d30fff88b8cfb3b2add2f03f">a0dca526</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:46:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/49dc3fb892e19cd6b9fe7af1ac388a51f9e29275">49dc3fb8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:46:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/334ee6e84da4727bfb1894ecf67bcb9f24b0ad73">334ee6e8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:46:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: watch file standard 4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/-/commit/9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba">9a4ba944</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-01T12:49:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">beast-mcmc (1.10.4+dfsg-3) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">beast-mcmc (1.10.4+dfsg-3) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Debian Janitor ]</span>
</pre>
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<td class="new_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Apply multi-arch hints.</span>
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<td class="old_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> + beast-mcmc-examples: Add Multi-Arch: foreign.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> -- Debian Janitor <janitor@jelmer.uk> Wed, 28 Oct 2020 05:24:55 -0000</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github</span>
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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,</span>
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<td class="new_line diff-line-num new" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> Repository-Browse.</span>
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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * watch file standard 4 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 01 Oct 2021 12:46:38 +0200</span>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">beast-mcmc (1.10.4+dfsg-2) unstable; urgency=medium</span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,16 +4,16 @@ Uploaders: Andreas Tille <tille@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Olivier Sallou <osallou@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (<span class="idiff left">></span>= 1<span class="idiff right">1~</span>),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left">-compat</span> (= 1<span class="idiff right">3</span>),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> javahelper,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> ant,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> ant-optional,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> default-jdk,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libjebl2-java,</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> libjam-java<span class="idiff left right"> (>= 0.1.20140824)</span>,</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> libjam-java,</span>
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14
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> figtree,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> liboptions-java,</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> libhmsbeagle-java<span class="idiff left right"> (>= 3.1.2~)</span>,</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> libhmsbeagle-java,</span>
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17
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> libcolt-free-java,</span>
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libmpj-java,</span>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> r-cran-rjava,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,16 +24,17 @@ Build-Depends: debhelper (>= 11~),</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> libitext1-java,</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> libejml-java (>= 0.38),</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> libjlapack-java</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6.0</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/beast-mcmc</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/beast-mcmc.git</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">Homepage: http://beast.bio.ed.ac.uk/</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">Package: beast-mcmc</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> libhmsbeagle-java<span class="idiff left right"> (>= 3.1.2~)</span>,</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> libhmsbeagle-java,</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ${java:Depends},</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> default-jre | java6-runtime,</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> libnucleotidelikelihoodcore0 (>= ${source:Version}),</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -74,11 +75,11 @@ Description: implementation of LikelihoodCore for nucleotides used by beast-mcmc</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext">Package: beast-mcmc-examples</span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext">Multi-Arch: foreign</span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext">Section: doc</span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext">Enhances: beast-mcmc</span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext">Multi-Arch: foreign</span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext">Description: Bayesian MCMC phylogenetic inference - example data</span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> BEAST is a cross-platform program for Bayesian MCMC analysis of molecular</span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> sequences. It is entirely orientated towards rooted, time-measured</span>
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<a href="https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash -e</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>beast-mcmc</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">A<span class="idiff left right">DT</span>TMP</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="sb" style="color: #d14;">`</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="sb" style="color: #d14;">`</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>file <span class="k" style="font-weight: 600;">in</span> /usr/share/doc/beast-mcmc/examples/<span class="k" style="font-weight: 600;">*</span>/<span class="k" style="font-weight: 600;">*</span><span class="se" style="color: #d14;">\.</span>xml </span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">do </span></span>
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<a href="https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/beast-dev/beast-mcmc/issues</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/beast-dev/beast-mcmc/issues/new</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Author: Alexei J Drummond and Andrew Rambaut</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Title: "BEAST: Bayesian evolutionary analysis by sampling trees"</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,3 +21,5 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> Entry: OMICS_04233</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> Entry: beast</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">Repository: https://github.com/beast-dev/beast-mcmc.git</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">Repository-Browse: https://github.com/beast-dev/beast-mcmc</span></pre>
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<a href="https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">version=<span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">version=<span class="idiff left right">4</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">opts="uversionmangle=s/_/./g,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> https://github.com/beast-dev/beast-mcmc/releases .*/<span class="idiff left right">archive/</span>[a-z_]*(\d[\d._]+)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz))</span></pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> https://github.com/beast-dev/beast-mcmc/releases .*/[a-z_]*(\d[\d._]+)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz))</span></pre>
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