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GitLab

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<h3>

Andreas Tille pushed to branch master

at <a href="https://salsa.debian.org/med-team/python-ruffus">Debian Med / python-ruffus</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/88aa6572dafb0e39f1f6dc4fa26d55eb857dd758">88aa6572</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2021-10-01T10:01:34+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt to sphinx 4.x API

</pre>

</li>

</ul>

<h4>6 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">

debian/changelog

</a>

</li>

<li class="file-stats">

<a href="#82e0bda1ef781bbe11386f41bc18524910c179a4">

<span class="deleted-file">

−

debian/patches/fix_test.patch

</span>

</a>

</li>

<li class="file-stats">

<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

debian/patches/series

</a>

</li>

<li class="file-stats">

<a href="#1b6ed6fc6860dc55cd7df40a6f2d37c8c2d2b2ae">

<span class="new-file">

+

debian/patches/sphinx4.patch

</span>

</a>

</li>

<li class="file-stats">

<a href="#3cc64348a2836926cb3c998ee32f0ecf0187d1bc">

debian/patches/use_libjs-mathjax.patch

</a>

</li>

<li class="file-stats">

<a href="#3d1e9a89486619b2dfa01c5494d25b3e4b9100a0">

<span class="deleted-file">

−

debian/patches/use_png_instead_of_jpg.patch

</span>

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">

<a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/88aa6572dafb0e39f1f6dc4fa26d55eb857dd758#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,6 +2,7 @@ python-ruffus (2.8.4-3) UNRELEASED; urgency=medium</td>

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2

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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>

</pre>

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3

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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">  * Fix watchfile to detect new versions on github</span>

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<td class="old_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">  * Standards-Version: 4.6.0 (routine-update)</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">  * Adapt to sphinx 4.x API</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>

</pre>

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org>  Thu, 30 Sep 2021 14:18:35 +0200</span>

</pre>

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>

</pre>

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<br>

</li>

<li id="82e0bda1ef781bbe11386f41bc18524910c179a4">

<a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/88aa6572dafb0e39f1f6dc4fa26d55eb857dd758#82e0bda1ef781bbe11386f41bc18524910c179a4"><strong>debian/patches/fix_test.patch</strong>

deleted

</a>

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Wed, 11 Jul 2018 11:21:00 +0200</span></span>

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Description: For some strange reason without this patch the test ends up in</span></span>

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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"> .</span>

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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"> ImportError: No module named ruffus</span>

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"></span>

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff">--- a/ruffus/test/test_pool_manager.py</span>

</pre>

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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ruffus/test/test_pool_manager.py</span></span>

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">@@ -1,3 +1,11 @@</span></span>

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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/env python</span></span>

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11

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<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import os</span></span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

12

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import sys</span></span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

13

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

14

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+## add grandparent to search path for testing</span></span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

15

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+grandparent_dir = os.path.abspath(os.path.join(os.path.dirname(__file__), "..", ".."))</span></span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

16

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+sys.path.insert(0, grandparent_dir)</span></span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

17

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<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

18

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> import contextlib</span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

19

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> import random</span>

</pre>

</td>

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<td class="old_line diff-line-num old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

20

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<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> import unittest</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

<a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/88aa6572dafb0e39f1f6dc4fa26d55eb857dd758#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

</td>

<td class="new_line diff-line-num" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use_libjs-mathjax.patch</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2

</td>

<td class="new_line diff-line-num" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">#use_png_instead_of_jpg.patch</span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

</td>

<td class="new_line diff-line-num" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">#fix_test.patch</span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">sphinx4.patch</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="1b6ed6fc6860dc55cd7df40a6f2d37c8c2d2b2ae">

<a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/88aa6572dafb0e39f1f6dc4fa26d55eb857dd758#1b6ed6fc6860dc55cd7df40a6f2d37c8c2d2b2ae"><strong>debian/patches/sphinx4.patch</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

2

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Thu, 30 Sep 2021 14:18:35 +0200</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Adapt to sphinx 4.x API</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

5

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/doc/conf.py</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

6

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/doc/conf.py</span></span>

</pre>

</td>

</tr>

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -21,7 +21,7 @@</span> import ruffus, ruffus.task, ruffus.ruffu</span>

</pre>

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> def setup(app):</span>

</pre>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff">    #app.add_javascript("custom.js")</span>

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff">    if not on_rtd:</span>

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-       app.add_stylesheet("ruffus.css")</span></span>

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+       app.add_css_file("ruffus.css")</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>

</pre>

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>

</pre>

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> # If extensions (or modules to document with autodoc) are in another directory,</span></pre>

</td>

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<br>

</li>

<li id="3cc64348a2836926cb3c998ee32f0ecf0187d1bc">

<a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/88aa6572dafb0e39f1f6dc4fa26d55eb857dd758#3cc64348a2836926cb3c998ee32f0ecf0187d1bc"><strong>debian/patches/use_libjs-mathjax.patch</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Description: Use Debian packaged mathjax</td>

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4

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4

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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"></span>

</pre>

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5

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">--- a/doc/conf.py</span>

</pre>

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/doc/conf.py</span></span>

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7

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="p">@@ -3<span class="idiff left">8</span>,6 +3<span class="idiff right">8</span>,8 @@</span> def setup(app):</span>

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -3<span class="idiff left">9</span>,6 +3<span class="idiff right">9</span>,8 @@</span> def setup(app):</span>

</pre>

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> extensions = ['sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.todo',</span>

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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff">               'sphinx.ext.coverage', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode']</span>

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10

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> </span>

</pre>

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<li id="3d1e9a89486619b2dfa01c5494d25b3e4b9100a0">

<a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/88aa6572dafb0e39f1f6dc4fa26d55eb857dd758#3d1e9a89486619b2dfa01c5494d25b3e4b9100a0"><strong>debian/patches/use_png_instead_of_jpg.patch</strong>

deleted

</a>

<hr>

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1

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>

</pre>

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2

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Mon, 25 Jul 2016 13:19:50 +0200</span></span>

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Description: Create PNG instead of JPG to work around bug #827806</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"> Thanks to Christian Seiler for the hint</span>

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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"></span>

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff">--- a/doc/pipeline_functions.rst</span>

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/doc/pipeline_functions.rst</span></span>

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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -460,7 +460,7 @@</span> Ruffus Functions</span>

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff">     **Example**:</span>

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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff">         ::</span>

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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-            pipeline_printout_graph("flowchart.jpg", "jpg", [task1, task16],</span></span>

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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            pipeline_printout_graph("flowchart.png", "png", [task1, task16],</span></span>

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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff">                                         forcedtorun_tasks = [task2],</span>

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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff">                                         no_key_legend = True)</span>

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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ruffus/task.py</span></span>

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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ruffus/task.py</span></span>

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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="p">@@ -4051,7 +4051,7 @@</span> def pipeline_printout_graph(stream,</span>

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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff">     :param stream: where to print to</span>

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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff">     :type stream: file-like object with ``write()`` function</span>

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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :param output_format: ["dot", "jpg", "svg", "ps", "png"]. All but the</span></span>

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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+    :param output_format: ["dot", "svg", "ps", "png"]. All but the</span></span>

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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff">                           first depends on the</span>

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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff">                           `dot <http://www.graphviz.org>`_ program.</span>

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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff">     :param target_tasks: targets task functions which will be run if they are</span>

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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ruffus/test/test_pipeline_printout_graph.py</span></span>

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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ruffus/test/test_pipeline_printout_graph.py</span></span>

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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"><span class="p">@@ -114,7 +114,7 @@</span> class Test_ruffus(unittest.TestCase):</span>

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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff">         os.makedirs(tempdir)</span>

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<pre style="margin: 0;">-<span id="LC32" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff">         #</span>

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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        #   check graphviz exists for turning dot files into jpg, svg etc</span></span>

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<pre style="margin: 0;">-<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+        #   check graphviz exists for turning dot files into png, svg etc</span></span>

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<pre style="margin: 0;">-<span id="LC36" class="line" lang="diff">         #</span>

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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff">         try:</span>

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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff">             process = Popen("echo what | dot", stdout=PIPE,</span>

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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"><span class="p">@@ -136,7 +136,7 @@</span> class Test_ruffus(unittest.TestCase):</span>

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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff">         print("     Run pipeline normally...")</span>

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<pre style="margin: 0;">-<span id="LC41" class="line" lang="diff">         if self.graph_viz_present:</span>

</pre>

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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff">             pipeline_printout_graph(tempdir + "flowchart.dot", pipeline="main")</span>

</pre>

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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-            pipeline_printout_graph(tempdir + "flowchart.jpg",</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            pipeline_printout_graph(tempdir + "flowchart.png",</span></span>

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<pre style="margin: 0;">-<span id="LC45" class="line" lang="diff">                                     target_tasks=[subdivide_start],</span>

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<pre style="margin: 0;">-<span id="LC46" class="line" lang="diff">                                     forcedtorun_tasks=[split_start],</span>

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<pre style="margin: 0;">-<span id="LC47" class="line" lang="diff">                                     no_key_legend=True)</span>

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<pre style="margin: 0;">-<span id="LC48" class="line" lang="diff"><span class="p">@@ -172,7 +172,7 @@</span> class Test_ruffus(unittest.TestCase):</span>

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<pre style="margin: 0;">-<span id="LC49" class="line" lang="diff">         ), tempdir + '{basename[0]}_*.subdivided', tempdir + '{basename[0]}')</span>

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<pre style="margin: 0;">-<span id="LC50" class="line" lang="diff">         if self.graph_viz_present:</span>

</pre>

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<pre style="margin: 0;">-<span id="LC51" class="line" lang="diff">             test_pipeline.printout_graph(tempdir + "flowchart.dot")</span>

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<pre style="margin: 0;">-<span id="LC52" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-            test_pipeline.printout_graph(tempdir + "flowchart.jpg",</span></span>

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<pre style="margin: 0;">-<span id="LC53" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            test_pipeline.printout_graph(tempdir + "flowchart.png",</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC54" class="line" lang="diff">                                          target_tasks=[subdivide_start],</span>

</pre>

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<pre style="margin: 0;">-<span id="LC55" class="line" lang="diff">                                          forcedtorun_tasks=[split_start],</span>

</pre>

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<pre style="margin: 0;">-<span id="LC56" class="line" lang="diff">                                          no_key_legend=True)</span></pre>

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