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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/11557007e60119e25556b8f76c8ea1f0eb3c544c">11557007</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-10-06T15:45:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/f781868ac76d9b5042be2e17e544e0a78d326a2e">f781868a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-10-06T15:45:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.12</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/427d48653ee2f796921f4ec878e5f333f7c4c701">427d4865</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-10-06T15:45:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.0.12'
Update to upstream version '2.0.12'
with Debian dir c17d92d42aca68db26e03bf13428647010077aaf</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/f68bee9e79c1abb3c34db94ee7fc11ba3b13eb74">f68bee9e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-10-06T15:45:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<a href="#9ae3f8f5993cde39520379ad6054df829e6c91a7">
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.github/workflows/cmake.yml
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<a href="#2f473ef69010f24d2546e13263bcc2c49befd2f3">
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CITATION.cff
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">
src/ChangeLog
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<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
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<li class="file-stats">
<a href="#61cd51bfb6b0ef754d2fbb366e90b8ad35f3fc02">
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src/align/alt_hsp.cpp
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<a href="#8310f6d8c536d182ebd128c5e462f7c6addcbf6d">
src/align/culling.cpp
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<li class="file-stats">
<a href="#5a2381540b8362260dcaa6747086bb358097256e">
src/align/extend.cpp
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<a href="#52ecbb45dea21619756b1951b32ef00fa81a1d54">
src/align/extend.h
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<a href="#a70d5a64b741f28155bdcdf591968e4b59b60de4">
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src/align/full_db.cpp
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<a href="#b18faac0ee01a4af7eb1b183c49e78e698af5c15">
src/align/gapped_filter.cpp
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<a href="#9fc8681bb50d867858382e8ecdfd9bc32570af85">
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src/align/gapped_final.cpp
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<li class="file-stats">
<a href="#7540abd0721601ec3b35ecdd671f39ce63cef20f">
src/align/gapped.cpp
→
src/align/gapped_score.cpp
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<li class="file-stats">
<a href="#1885ffadb5308ef489a619e821b06986ef227e22">
src/align/global_ranking/extend.cpp
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<li class="file-stats">
<a href="#1b90f5ee8b6ca86e42623b99dcbd74ad0880c831">
src/align/global_ranking/global_ranking.cpp
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<li class="file-stats">
<a href="#355a81a80ba3265c142881855d11cb783cf1858e">
src/align/global_ranking/global_ranking.h
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<a href="#8f9453cefaa66bad075c8bcb49a08b740b24e222">
src/align/legacy/banded_swipe_pipeline.cpp
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<li class="file-stats">
<a href="#79b081d050ff058cc4444df01970041d95b03792">
src/align/legacy/query_mapper.cpp
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<a href="#84d656034746137b8c6b0226ff878a5b99cc6bb3">
src/align/output.cpp
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<li class="file-stats">
<a href="#6d09ff6bcfac65c792218c53e21ca1a9e62a26ba">
src/align/target.h
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<li class="file-stats">
<a href="#f8990446cab751baed0b8c7fc38171e7d68cb1f7">
src/align/ungapped.cpp
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<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">
src/basic/basic.cpp
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<li class="file-stats">
<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">
src/basic/config.cpp
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<a href="#79a175a8b141cc4f06683108fcd39b79a555f1cd">
src/basic/config.h
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<li class="file-stats">
<a href="#da280a51d91809345347036c4e31920b2c744ab7">
src/basic/const.h
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<li class="file-stats">
<a href="#67a4682d5d2875c1c9fd5d4af1462dad844cba29">
src/basic/diagonal_segment.h
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<h5>The diff was not included because it is too large.</h5>
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