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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/blasr">Debian Med / blasr</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/-/commit/ed3b914febacf262d99a87b15b63290abf83d684">ed3b914f</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-10-11T10:14:35+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make sure version bumps will not break autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/-/commit/cb7d89d796bc0fb5c71538bd35498d9f82312b09">cb7d89d7</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-10-11T10:16:22+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/blasr/-/compare/6284305cde9672f7df076d27a6c4c8834aad811c...cb7d89d796bc0fb5c71538bd35498d9f82312b09#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">blasr (5.3.5+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">blasr (5.3.5+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> TODO:</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">md5sum: WARNING: 1 computed checksum did NOT match</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">output: OK</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">alignment.sam: FAILED</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">autopkgtest [14:12:49]: test run-unit-test: -----------------------]</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">autopkgtest [14:12:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - -</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">run-unit-test FAIL non-zero exit status 1</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">autopkgtest [14:12:49]: @@@@@@@@@@@@@@@@@@@@ summary</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">run-unit-test FAIL non-zero exit status 1</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 08 Oct 2021 16:07:31 +0200</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Make sure version bumps will not break autopkgtest</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 11 Oct 2021 10:14:43 +0200</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">blasr (5.3.3+dfsg-7) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/blasr/-/compare/6284305cde9672f7df076d27a6c4c8834aad811c...cb7d89d796bc0fb5c71538bd35498d9f82312b09#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,7 +18,8 @@ blasr query.fasta ref.fa --minMatch 1 --maxMatch 10 > output</td>
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<td class="old_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="si" style="color: #d14;">$(</span>dpkg-architecture <span class="nt" style="color: #000080;">-qDEB_BUILD_ARCH</span><span class="si" style="color: #d14;">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"amd64"</span> <span class="o" style="font-weight: 600;">]</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"><span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"8db2f4d5737a90d087da90a6779c8d7b output"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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<td class="old_line diff-line-num old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"0a61b96282acbc63df897dd1510ea0ad alignment.sam"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/\(PN:BLASR[[:space:]]\+VN:\)5.3.5\([[:space:]]\+CL:blasr\)/\1VERSION\2/'</span> alignment.sam <span class="o" style="font-weight: 600;">></span> alignment.sam.check</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"4ff931c75012f8c2e02c75120351e217 alignment.sam.check"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="shell"> </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">md5sum</span> <span class="nt" style="color: #000080;">--check</span> checksums</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Expected output and generated output are same: PASS Test"</span></span>
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