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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/plasmidid">Debian Med / plasmidid</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/47e4e49a91b9748553bf74557f22dd4d33f1f631">47e4e49a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:49:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.6.5+dfsg</pre>
</li>
</ul>
<h4>22 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#dc1f319a3170cc1e3659825bfb501112ad8e7deb">
<span class="deleted-file">
−
Singularity
</span>
</a>
</li>
<li class="file-stats">
<a href="#67a7481436ea15817c620069979211d3a765ee35">
bin/blast_to_bed.sh
</a>
</li>
<li class="file-stats">
<a href="#c5689bb027ac6c1305c570dbca410cd455262deb">
bin/filter_fasta.sh
</a>
</li>
<li class="file-stats">
<a href="#36240149fbf75989286e9663f562a648f52db261">
bin/mash_screener.sh
</a>
</li>
<li class="file-stats">
<a href="#8b54bc5b047389f697e508f950663f58bd069945">
bin/prokka_annotation.sh
</a>
</li>
<li class="file-stats">
<a href="#b19e0dcc2ca89f499c5c1830732036c0a3f93743">
bin/summary_report_pid.py
</a>
</li>
<li class="file-stats">
<a href="#61be622aae7827f7e7358a89b609ce68e5f584eb">
config_files/OR.conf
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</li>
<li class="file-stats">
<a href="#2b45a102eb2fd17cd25b136bf8aafc20dc686b88">
annotation_config_file.txt
→
config_files/annotation_config_file.txt
</a>
</li>
<li class="file-stats">
<a href="#61ba9393cf295b169c3507e2cf5d4eea1359bcb9">
config_files/circos_individual_1_3_3.conf
</a>
</li>
<li class="file-stats">
<a href="#7bd5cce2a583fa1601a7861996b0b417c62983fc">
config_files/circos_summary_1_3_3.conf
</a>
</li>
<li class="file-stats">
<a href="#7fcb60c30ae2a8323104e0b8f60cebac2d84fcdf">
config_files/simple.conf
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</li>
<li class="file-stats">
<a href="#54c391de2500e0856c23737daf64f9d931569110">
<span class="new-file">
+
environment.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#71e08c3f564f9f6432e5f109477a43a91cddd087">
<span class="deleted-file">
−
old/01_Trimmer_assembler_validater_BU_ISCIII.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#764ca0dbf2d912c8aa8be9203bb11f2749d04d32">
<span class="deleted-file">
−
old/05_Quast_report_BU_ISCIII.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#91440b02bc261c230e4af0ed4978454745eb7dba">
<span class="deleted-file">
−
old/1_filter_reads_to_plasmid_ddbb.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#12dc6978e90e925057183f8591bd533b29245ae3">
<span class="deleted-file">
−
old/2_Find_plasmid_with_more_coverage.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#0b720af5c252ea4653f7a5e5d80fa0ac5b1ef724">
<span class="deleted-file">
−
old/3_Draw_plasmid_with_more_coverage.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#0f98a93eab5b8da77d455deaaead99270d4dfa6b">
<span class="deleted-file">
−
old/4_Draw_circos_images.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#b31ed4bdf289618953a8bedf053f63f74d0e8776">
<span class="deleted-file">
−
old/5_Stats_coverage.sh
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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