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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/plasmidid">Debian Med / plasmidid</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/d4be41d52c2a7221fa7961eda264f454a5595108">d4be41d5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:48:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/a9618921780024d3745f7a6227fb6616bf1c2d1e">a9618921</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:49:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/47e4e49a91b9748553bf74557f22dd4d33f1f631">47e4e49a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:49:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.6.5+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/5e130370d856fd090507191442e92c96c583ccb5">5e130370</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:50:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.6.5+dfsg'
Update to upstream version '1.6.5+dfsg'
with Debian dir ff590baf612c22e90c32dd27e14e372fd2ac6653</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/866fe1dd0bbaa7f203cd61a628394a35c019be7a">866fe1dd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:50:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/8391f92d96797e8a542aa8dff07ea74f133b94b0">8391f92d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:56:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/f4cb471c643e46dfd45d959f9d6e14362a85423c">f4cb471c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:57:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt tests to new path
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plasmidid/-/commit/bbd7db62b48c7f3a028601b0e78455b57e3b7b7c">bbd7db62</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-11T10:59:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>28 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#dc1f319a3170cc1e3659825bfb501112ad8e7deb">
<span class="deleted-file">
−
Singularity
</span>
</a>
</li>
<li class="file-stats">
<a href="#67a7481436ea15817c620069979211d3a765ee35">
bin/blast_to_bed.sh
</a>
</li>
<li class="file-stats">
<a href="#c5689bb027ac6c1305c570dbca410cd455262deb">
bin/filter_fasta.sh
</a>
</li>
<li class="file-stats">
<a href="#36240149fbf75989286e9663f562a648f52db261">
bin/mash_screener.sh
</a>
</li>
<li class="file-stats">
<a href="#8b54bc5b047389f697e508f950663f58bd069945">
bin/prokka_annotation.sh
</a>
</li>
<li class="file-stats">
<a href="#b19e0dcc2ca89f499c5c1830732036c0a3f93743">
bin/summary_report_pid.py
</a>
</li>
<li class="file-stats">
<a href="#61be622aae7827f7e7358a89b609ce68e5f584eb">
config_files/OR.conf
</a>
</li>
<li class="file-stats">
<a href="#2b45a102eb2fd17cd25b136bf8aafc20dc686b88">
annotation_config_file.txt
→
config_files/annotation_config_file.txt
</a>
</li>
<li class="file-stats">
<a href="#61ba9393cf295b169c3507e2cf5d4eea1359bcb9">
config_files/circos_individual_1_3_3.conf
</a>
</li>
<li class="file-stats">
<a href="#7bd5cce2a583fa1601a7861996b0b417c62983fc">
config_files/circos_summary_1_3_3.conf
</a>
</li>
<li class="file-stats">
<a href="#7fcb60c30ae2a8323104e0b8f60cebac2d84fcdf">
config_files/simple.conf
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#5ed2b78a31077735f59465c1b69dcbf181908700">
debian/patches/fixTests.patch
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
debian/patches/spelling.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#54c391de2500e0856c23737daf64f9d931569110">
<span class="new-file">
+
environment.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#71e08c3f564f9f6432e5f109477a43a91cddd087">
<span class="deleted-file">
−
old/01_Trimmer_assembler_validater_BU_ISCIII.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#764ca0dbf2d912c8aa8be9203bb11f2749d04d32">
<span class="deleted-file">
−
old/05_Quast_report_BU_ISCIII.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#91440b02bc261c230e4af0ed4978454745eb7dba">
<span class="deleted-file">
−
old/1_filter_reads_to_plasmid_ddbb.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#12dc6978e90e925057183f8591bd533b29245ae3">
<span class="deleted-file">
−
old/2_Find_plasmid_with_more_coverage.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#0b720af5c252ea4653f7a5e5d80fa0ac5b1ef724">
<span class="deleted-file">
−
old/3_Draw_plasmid_with_more_coverage.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#0f98a93eab5b8da77d455deaaead99270d4dfa6b">
<span class="deleted-file">
−
old/4_Draw_circos_images.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#b31ed4bdf289618953a8bedf053f63f74d0e8776">
<span class="deleted-file">
−
old/5_Stats_coverage.sh
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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