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<h3>

Andreas Tille pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/filtlong">Debian Med / filtlong</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c">0fcecb87</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2021-10-13T09:47:24+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.2.1</pre>

</li>

</ul>

<h4>9 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">

README.md

</a>

</li>

<li class="file-stats">

<a href="#bfd42b091bfb8273e08b1987652a9b2a5bea3cfb">

<span class="new-file">

+

scripts/README.md

</span>

</a>

</li>

<li class="file-stats">

<a href="#9600c7f8a37269b653129d7ba2379ad83b4b2f54">

<span class="new-file">

+

scripts/histogram.py

</span>

</a>

</li>

<li class="file-stats">

<a href="#00f0081fdcc29acac8e618c176f91ea25c7b3e6d">

<span class="new-file">

+

scripts/read_info_histograms.sh

</span>

</a>

</li>

<li class="file-stats">

<a href="#73c762a7efe6bf6111f932ffc25fd22717017144">

src/arguments.cpp

</a>

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<li class="file-stats">

<a href="#bcdb375d30dc5d528a02896b66856d5cbcd4d898">

src/arguments.h

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<li class="file-stats">

<a href="#b958235ee8db37bcaceda04b6d55553b450c2db4">

src/main.cpp

</a>

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<li class="file-stats">

<a href="#57c3c58e9b5fb7fc752c23a0041722bf1cf56a8c">

src/read.cpp

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<li class="file-stats">

<a href="#a865f66cabff6d6ef0cbc2d2c4e042d923779f00">

<span class="deleted-file">

−

test_sort.fastq

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</a>

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<h4>Changes:</h4>

<li id="8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d"><strong>README.md</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -109,7 +109,7 @@ filtlong --min_length 1000 --keep_percent 90 --target_bases 500000000 input.fast</td>

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<pre style="margin: 0;"> <span id="LC109" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;"> <span id="LC110" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">### With Illumina read reference</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC111" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC112" class="line" lang="markdown">When an external reference is provided, Filtlong ignores the Phred quality scores and instead judges read quality using k-mer matches to the reference (a more accurate gauge of quality). FASTA input reads are allowed when a reference is provided, and if used Filtlong will produce FASTA output.</span>

</pre>

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<pre style="margin: 0;">+<span id="LC112" class="line" lang="markdown">When an external reference is provided, Filtlong ignores the Phred quality scores and instead judges read quality using k-mer matches to the reference (a more accurate gauge of quality). FASTA input reads are allowed when a reference is provided, and if used<span class="idiff left right">,</span> Filtlong will produce FASTA output.</span>

</pre>

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<pre style="margin: 0;"> <span id="LC113" class="line" lang="markdown"></span>

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<pre style="margin: 0;"> <span id="LC114" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC115" class="line" lang="markdown">filtlong -1 illumina_1.fastq.gz -2 illumina_2.fastq.gz --min_length 1000 --keep_percent 90 --target_bases 500000000 input.fastq.gz | gzip > output.fastq.gz</span>

</pre>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -130,6 +130,7 @@ filtlong -1 illumina_1.fastq.gz -2 illumina_2.fastq.gz --min_length 1000 --keep_</td>

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<pre style="margin: 0;"> <span id="LC130" class="line" lang="markdown">    <span class="nt" style="color: #000080;"></tr></span></span>

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<pre style="margin: 0;"> <span id="LC131" class="line" lang="markdown"><span class="nt" style="color: #000080;"></table></span></span>

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<pre style="margin: 0;"> <span id="LC132" class="line" lang="markdown"></span>

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<td class="old_line diff-line-num new" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC133" class="line" lang="markdown"></span>

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<td class="new_line diff-line-num" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC134" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">### With trimming and splitting</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC135" class="line" lang="markdown"></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC136" class="line" lang="markdown">When an external reference is provided, you can turn on read trimming and splitting to further increase read quality. See <span class="p">[</span><span class="nv" style="color: #008080;">Trimming and splitting</span><span class="p">](</span><span class="sx" style="color: #d14;">#trimming-and-splitting</span><span class="p">)</span> for more information.</span>

</pre>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,7 +140,7 @@ filtlong -1 illumina_1.fastq.gz -2 illumina_2.fastq.gz --min_length 1000 --keep_</td>

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<pre style="margin: 0;"> <span id="LC140" class="line" lang="markdown"><span class="p">```</span></span>

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<pre style="margin: 0;"> <span id="LC141" class="line" lang="markdown"></span>

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<pre style="margin: 0;"> <span id="LC142" class="line" lang="markdown"><span class="p">*</span> <span class="sb" style="color: #d14;">`--trim`</span> ← Trim bases from the start and end of reads which do not match a k-mer in the reference. This ensures the each read starts and ends with good sequence.</span>

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<pre style="margin: 0;">-<span id="LC142" class="line" lang="markdown"><span class="p">*</span> <span class="sb" style="color: #d14;">`--split 500`</span> ← Split reads whenever 500 conse<span class="idiff left right">quenc</span>e bases fail to match a k-mer in the reference. This serves to remove very poor parts of reads while keeping the good parts. A lower value will split more aggressively and a higher value will be more conservative.</span>

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<pre style="margin: 0;">+<span id="LC143" class="line" lang="markdown"><span class="p">*</span> <span class="sb" style="color: #d14;">`--split 500`</span> ← Split reads whenever 500 conse<span class="idiff left right">cutiv</span>e bases fail to match a k-mer in the reference. This serves to remove very poor parts of reads while keeping the good parts. A lower value will split more aggressively and a higher value will be more conservative.</span>

</pre>

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<pre style="margin: 0;"> <span id="LC144" class="line" lang="markdown"></span>

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<pre style="margin: 0;"> <span id="LC145" class="line" lang="markdown"><span class="nt" style="color: #000080;"><table></span></span>

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<pre style="margin: 0;"> <span id="LC146" class="line" lang="markdown">    <span class="nt" style="color: #000080;"><tr></span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -182,7 +183,7 @@ filtlong -1 illumina_1.fastq.gz -2 illumina_2.fastq.gz --min_length 1000 --keep_</td>

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<pre style="margin: 0;"> <span id="LC183" class="line" lang="markdown"></span>

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<pre style="margin: 0;"> <span id="LC184" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">### Quality priority</span></span>

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<pre style="margin: 0;"> <span id="LC185" class="line" lang="markdown"></span>

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<pre style="margin: 0;">-<span id="LC185" class="line" lang="markdown">You can adjust the relative importance of Filtlong's read metrics. In this example, more weight is given to read <span class="idiff left right">length</span>.</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC186" class="line" lang="markdown">You can adjust the relative importance of Filtlong's read metrics. In this example, more weight is given to read <span class="idiff left right">quality</span>.</span>

</pre>

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<pre style="margin: 0;"> <span id="LC187" class="line" lang="markdown"></span>

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<pre style="margin: 0;"> <span id="LC188" class="line" lang="markdown"><span class="p">```</span></span>

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<pre style="margin: 0;"> <span id="LC189" class="line" lang="markdown">filtlong -1 illumina_1.fastq.gz -2 illumina_2.fastq.gz --min_length 1000 --keep_percent 90 --target_bases 500000000 --trim --split 100 --mean_q_weight 10 input.fastq.gz | gzip > output.fastq.gz</span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -222,6 +223,7 @@ optional arguments:</td>

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<pre style="margin: 0;"> <span id="LC223" class="line" lang="markdown">      -p[float], --keep_percent [float]    keep only this percentage of the best reads (measured by</span>

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<pre style="margin: 0;"> <span id="LC224" class="line" lang="markdown">                                           bases)</span>

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<pre style="margin: 0;"> <span id="LC225" class="line" lang="markdown">      --min_length [int]                   minimum length threshold</span>

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<pre style="margin: 0;">+<span id="LC226" class="line" lang="markdown">      --max_length [int]                   maximum length threshold</span>

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<pre style="margin: 0;"> <span id="LC227" class="line" lang="markdown">      --min_mean_q [float]                 minimum mean quality threshold</span>

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<pre style="margin: 0;"> <span id="LC228" class="line" lang="markdown">      --min_window_q [float]               minimum window quality threshold</span>

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<pre style="margin: 0;"> <span id="LC229" class="line" lang="markdown"></span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -261,7 +263,9 @@ When run, Filtlong carries out the following steps:</td>

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<pre style="margin: 0;"> <span id="LC263" class="line" lang="markdown"><span class="p">    *</span> If the reference is an assembly, then Filtlong simply hashes all 16-mers in the assembly.</span>

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<pre style="margin: 0;"> <span id="LC264" class="line" lang="markdown"><span class="p">    *</span> If the reference is in Illumina reads, then the 16-mer has to be encountered a few times before it's hashed (to avoid hashing 16-mers that result from read errors).</span>

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<pre style="margin: 0;"> <span id="LC265" class="line" lang="markdown"><span class="p">2.</span> Look at each of the input reads to get length and quality information.</span>

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<pre style="margin: 0;">-<span id="LC264" class="line" lang="markdown"><span class="p">    *</span> If a read fails to meet any of the hard thresholds (<span class="sb" style="color: #d14;">`--min_length`</span>, <span class="sb" style="color: #d14;">`--min_mean_q`</span> or <span class="sb" style="color: #d14;">`--min_window_q`</span>) then it is marked as 'fail' now.</span>

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<pre style="margin: 0;">+<span id="LC266" class="line" lang="markdown"><span class="p">    *</span> If a read fails to meet any of the hard thresholds (<span class="sb" style="color: #d14;">`--min_length`</span>, <span class="sb" style="color: #d14;">`--max_length`</span>, <span class="sb" style="color: #d14;">`--min_mean_q`</span> or <span class="sb" style="color: #d14;">`--min_window_q`</span>) then it is marked as 'fail' now.</span>

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<pre style="margin: 0;">+<span id="LC267" class="line" lang="markdown"><span class="p">        *</span> Note that <span class="sb" style="color: #d14;">`--min_mean_q`</span> and <span class="sb" style="color: #d14;">`--min_window_q`</span> are expressed as sequence percent identities from 0-100 (see how this is calculated in the <span class="p">[</span><span class="nv" style="color: #008080;">Read scoring</span><span class="p">](</span><span class="sx" style="color: #d14;">#read-scoring</span><span class="p">)</span> section), not as PHRED scores.</span>

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<pre style="margin: 0;">+<span id="LC268" class="line" lang="markdown"><span class="p">        *</span> For advice on setting minimum quality thresholds, see <span class="p">[</span><span class="nv" style="color: #008080;">Filtlong's scripts directory</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/rrwick/Filtlong/tree/main/scripts</span><span class="p">)</span>.</span>

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<pre style="margin: 0;"> <span id="LC269" class="line" lang="markdown"><span class="p">    *</span> If <span class="sb" style="color: #d14;">`--trim`</span> or <span class="sb" style="color: #d14;">`--split`</span> was used, then 'child' reads are made here (see <span class="p">[</span><span class="nv" style="color: #008080;">Trimming and splitting</span><span class="p">](</span><span class="sx" style="color: #d14;">#trimming-and-splitting</span><span class="p">)</span>).</span>

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<pre style="margin: 0;"> <span id="LC270" class="line" lang="markdown"><span class="p">    *</span> If <span class="sb" style="color: #d14;">`--verbose`</span> was used, display detailed information about the read length, quality and trimming/splitting.</span>

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<pre style="margin: 0;"> <span id="LC271" class="line" lang="markdown"><span class="p">3.</span> Gather up all reads eligible for output. If neither <span class="sb" style="color: #d14;">`--trim`</span> nor <span class="sb" style="color: #d14;">`--split`</span> was used, this is simply the original set of reads. If <span class="sb" style="color: #d14;">`--trim`</span> or <span class="sb" style="color: #d14;">`--split`</span> was used, then the child reads replace the original reads.</span>

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<li id="bfd42b091bfb8273e08b1987652a9b2a5bea3cfb">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#bfd42b091bfb8273e08b1987652a9b2a5bea3cfb"><strong>scripts/README.md</strong></a>

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="markdown"><span class="gh" style="color: #800080; font-weight: 600;"># Filtlong supplementary scripts</span></span>

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="markdown"></span>

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="markdown">This directory contains a script (<span class="sb" style="color: #d14;">`read_info_histograms.sh`</span>) to assist with visualising read statistics. It uses a slightly modified version of the <span class="sb" style="color: #d14;">`histogram.py`</span> file from the <span class="p">[</span><span class="nv" style="color: #008080;">data_hacks repo</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/bitly/data_hacks</span><span class="p">)</span>.</span>

</pre>

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="markdown">Importantly, this script uses Filtlong to generate the data for its histograms. That means the quality values visualised are the same ones that Filtlong will use for filtering. If you are planning to use Filtlong with Illumina reads as an external reference, run this script with Illumina reads as well, so the quality scores are consistent.</span>

</pre>

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Example output (without an external reference)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="markdown">In this example, the qualities come from the FASTQ PHRED scores.</span>

</pre>

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">__Command__</span>:</span>

</pre>

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="markdown">path/to/Filtlong/scripts/read_info_histograms.sh long_reads.fastq.gz</span>

</pre>

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<pre style="margin: 0;">+<span id="LC16" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC18" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">__Output__</span>:</span>

</pre>

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<pre style="margin: 0;">+<span id="LC19" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC20" class="line" lang="markdown">READ SET SUMMARY</span>

</pre>

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<pre style="margin: 0;">+<span id="LC21" class="line" lang="markdown">----------------</span>

</pre>

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<pre style="margin: 0;">+<span id="LC22" class="line" lang="markdown">number of reads: 62,313</span>

</pre>

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<pre style="margin: 0;">+<span id="LC23" class="line" lang="markdown">number of bases: 498,400,580</span>

</pre>

</td>

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<pre style="margin: 0;">+<span id="LC24" class="line" lang="markdown">N50 read length: 16,730</span>

</pre>

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<pre style="margin: 0;">+<span id="LC25" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC26" class="line" lang="markdown"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC27" class="line" lang="markdown">READ LENGTHS</span>

</pre>

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<pre style="margin: 0;">+<span id="LC28" class="line" lang="markdown">------------</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC29" class="line" lang="markdown">Each ∎ represents 1,044,446 bases</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC30" class="line" lang="markdown">     0 -   3799 [45,923,686]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="markdown">  3799 -   7597 [73,111,261]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="markdown">  7597 -  11396 [63,135,675]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC33" class="line" lang="markdown"> 11396 -  15195 [49,558,377]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC34" class="line" lang="markdown"> 15195 -  18994 [40,910,839]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC35" class="line" lang="markdown"> 18994 -  22792 [34,441,187]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC36" class="line" lang="markdown"> 22792 -  26591 [28,738,160]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC37" class="line" lang="markdown"> 26591 -  30390 [24,738,026]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC38" class="line" lang="markdown"> 30390 -  34189 [22,096,602]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC39" class="line" lang="markdown"> 34189 -  37987 [18,985,609]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC40" class="line" lang="markdown"> 37987 -  41786 [15,406,318]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC41" class="line" lang="markdown"> 41786 -  45585 [12,755,023]: ∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC42" class="line" lang="markdown"> 45585 -  49383 [12,919,019]: ∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

43

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC43" class="line" lang="markdown"> 49383 -  53182 [ 9,529,903]: ∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

44

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC44" class="line" lang="markdown"> 53182 -  56981 [ 7,744,484]: ∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

45

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC45" class="line" lang="markdown"> 56981 -  60780 [ 6,403,620]: ∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

46

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC46" class="line" lang="markdown"> 60780 -  64578 [ 5,626,494]: ∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

47

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC47" class="line" lang="markdown"> 64578 -  68377 [ 5,434,617]: ∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

48

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC48" class="line" lang="markdown"> 68377 -  72176 [ 3,851,906]: ∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

49

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC49" class="line" lang="markdown"> 72176 -  75974 [ 3,104,518]: ∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

50

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC50" class="line" lang="markdown"> 75974 -  79773 [ 2,723,174]: ∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

51

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC51" class="line" lang="markdown"> 79773 -  83572 [ 2,445,516]: ∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

52

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC52" class="line" lang="markdown"> 83572 -  87371 [ 1,622,746]: ∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

53

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC53" class="line" lang="markdown"> 87371 -  91169 [ 1,424,798]: ∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

54

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC54" class="line" lang="markdown"> 91169 -  94968 [ 1,018,819]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

55

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC55" class="line" lang="markdown"> 94968 -  98767 [ 1,254,227]: ∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

56

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC56" class="line" lang="markdown"> 98767 - 102566 [ 1,000,129]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

57

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC57" class="line" lang="markdown">102566 - 106364 [   206,593]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

58

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC58" class="line" lang="markdown">106364 - 110163 [   217,310]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

59

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC59" class="line" lang="markdown">110163 - 113962 [   561,474]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC60" class="line" lang="markdown">113962 - 117760 [   233,150]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

61

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC61" class="line" lang="markdown">117760 - 121559 [   476,864]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

62

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC62" class="line" lang="markdown">121559 - 125358 [   248,209]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC63" class="line" lang="markdown">125358 - 129157 [         0]: </span>

</pre>

</td>

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</td>

<td class="new_line diff-line-num new" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

64

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC64" class="line" lang="markdown">129157 - 132955 [   262,547]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

65

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC65" class="line" lang="markdown">132955 - 136754 [         0]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

66

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC66" class="line" lang="markdown">136754 - 140553 [   137,751]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

67

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC67" class="line" lang="markdown">140553 - 144352 [         0]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

68

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC68" class="line" lang="markdown">144352 - 148150 [         0]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

69

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC69" class="line" lang="markdown">148150 - 151949 [   151,949]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

70

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC70" class="line" lang="markdown"></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

71

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC71" class="line" lang="markdown"></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

72

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC72" class="line" lang="markdown">MEAN QUALITIES</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

73

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC73" class="line" lang="markdown">--------------</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

74

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC74" class="line" lang="markdown">Each ∎ represents 984,822 bases</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

75

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC75" class="line" lang="markdown">65.6 - 66.3 [     4,750]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

76

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC76" class="line" lang="markdown">66.3 - 67.1 [       533]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

77

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC77" class="line" lang="markdown">67.1 - 67.8 [    43,474]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

78

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC78" class="line" lang="markdown">67.8 - 68.6 [     1,568]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

79

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC79" class="line" lang="markdown">68.6 - 69.3 [    24,007]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

80

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC80" class="line" lang="markdown">69.3 - 70.1 [    33,284]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

81

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC81" class="line" lang="markdown">70.1 - 70.8 [    80,237]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

82

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC82" class="line" lang="markdown">70.8 - 71.6 [    74,948]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

83

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC83" class="line" lang="markdown">71.6 - 72.3 [   125,425]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

84

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC84" class="line" lang="markdown">72.3 - 73.1 [   193,567]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

85

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC85" class="line" lang="markdown">73.1 - 73.8 [   179,704]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

86

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC86" class="line" lang="markdown">73.8 - 74.5 [   337,987]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

87

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC87" class="line" lang="markdown">74.5 - 75.3 [   659,382]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

88

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC88" class="line" lang="markdown">75.3 - 76.0 [   715,250]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

89

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC89" class="line" lang="markdown">76.0 - 76.8 [   890,534]: </span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

90

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC90" class="line" lang="markdown">76.8 - 77.5 [ 1,117,521]: ∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

91

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC91" class="line" lang="markdown">77.5 - 78.3 [ 1,309,180]: ∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

92

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC92" class="line" lang="markdown">78.3 - 79.0 [ 1,732,547]: ∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

93

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC93" class="line" lang="markdown">79.0 - 79.8 [ 2,328,104]: ∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

94

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC94" class="line" lang="markdown">79.8 - 80.5 [ 3,276,277]: ∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

95

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC95" class="line" lang="markdown">80.5 - 81.3 [ 3,484,277]: ∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

96

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC96" class="line" lang="markdown">81.3 - 82.0 [ 4,759,691]: ∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

97

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC97" class="line" lang="markdown">82.0 - 82.7 [ 6,444,131]: ∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

98

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC98" class="line" lang="markdown">82.7 - 83.5 [ 7,473,861]: ∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

99

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC99" class="line" lang="markdown">83.5 - 84.2 [ 9,623,707]: ∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

100

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC100" class="line" lang="markdown">84.2 - 85.0 [11,909,590]: ∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

101

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC101" class="line" lang="markdown">85.0 - 85.7 [14,997,120]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

102

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC102" class="line" lang="markdown">85.7 - 86.5 [19,717,703]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

103

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC103" class="line" lang="markdown">86.5 - 87.2 [25,483,029]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

104

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC104" class="line" lang="markdown">87.2 - 88.0 [29,508,578]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

105

</td>

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<pre style="margin: 0;">+<span id="LC105" class="line" lang="markdown">88.0 - 88.7 [36,579,391]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC106" class="line" lang="markdown">88.7 - 89.4 [44,757,036]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC107" class="line" lang="markdown">89.4 - 90.2 [54,706,747]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC108" class="line" lang="markdown">90.2 - 90.9 [64,024,337]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC109" class="line" lang="markdown">90.9 - 91.7 [68,937,558]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC110" class="line" lang="markdown">91.7 - 92.4 [54,405,581]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC111" class="line" lang="markdown">92.4 - 93.2 [24,211,000]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC112" class="line" lang="markdown">93.2 - 93.9 [ 3,607,372]: ∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC113" class="line" lang="markdown">93.9 - 94.7 [   623,042]: </span>

</pre>

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<pre style="margin: 0;">+<span id="LC114" class="line" lang="markdown">94.7 - 95.4 [    18,550]: </span>

</pre>

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<pre style="margin: 0;">+<span id="LC115" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC116" class="line" lang="markdown"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC117" class="line" lang="markdown">WINDOW QUALITIES</span>

</pre>

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<pre style="margin: 0;">+<span id="LC118" class="line" lang="markdown">----------------</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC119" class="line" lang="markdown">Each ∎ represents 512,055 bases</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC120" class="line" lang="markdown">53.3 - 54.4 [    43,895]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC121" class="line" lang="markdown">54.4 - 55.4 [    32,903]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC122" class="line" lang="markdown">55.4 - 56.5 [    10,451]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC123" class="line" lang="markdown">56.5 - 57.5 [    93,358]: </span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC124" class="line" lang="markdown">57.5 - 58.6 [   125,071]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

125

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<pre style="margin: 0;">+<span id="LC125" class="line" lang="markdown">58.6 - 59.6 [    61,604]: </span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

126

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<pre style="margin: 0;">+<span id="LC126" class="line" lang="markdown">59.6 - 60.6 [   631,021]: ∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

127

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<pre style="margin: 0;">+<span id="LC127" class="line" lang="markdown">60.6 - 61.7 [   770,097]: ∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

128

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<pre style="margin: 0;">+<span id="LC128" class="line" lang="markdown">61.7 - 62.7 [ 1,088,376]: ∎∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

129

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<pre style="margin: 0;">+<span id="LC129" class="line" lang="markdown">62.7 - 63.8 [ 1,288,929]: ∎∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

130

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC130" class="line" lang="markdown">63.8 - 64.8 [ 1,557,672]: ∎∎∎</span>

</pre>

</td>

</tr>

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</td>

<td class="new_line diff-line-num new" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

131

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<pre style="margin: 0;">+<span id="LC131" class="line" lang="markdown">64.8 - 65.9 [ 3,623,305]: ∎∎∎∎∎∎∎</span>

</pre>

</td>

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</td>

<td class="new_line diff-line-num new" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

132

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<pre style="margin: 0;">+<span id="LC132" class="line" lang="markdown">65.9 - 66.9 [ 3,870,845]: ∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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</td>

<td class="new_line diff-line-num new" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

133

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<pre style="margin: 0;">+<span id="LC133" class="line" lang="markdown">66.9 - 67.9 [ 5,679,487]: ∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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</td>

<td class="new_line diff-line-num new" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

134

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<pre style="margin: 0;">+<span id="LC134" class="line" lang="markdown">67.9 - 69.0 [ 7,660,899]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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</td>

<td class="new_line diff-line-num new" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

135

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC135" class="line" lang="markdown">69.0 - 70.0 [10,257,283]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

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</td>

<td class="new_line diff-line-num new" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

136

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC136" class="line" lang="markdown">70.0 - 71.1 [10,923,548]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

137

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC137" class="line" lang="markdown">71.1 - 72.1 [12,823,586]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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</td>

<td class="new_line diff-line-num new" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

138

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<pre style="margin: 0;">+<span id="LC138" class="line" lang="markdown">72.1 - 73.2 [14,691,154]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

139

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<pre style="margin: 0;">+<span id="LC139" class="line" lang="markdown">73.2 - 74.2 [17,058,927]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

140

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<pre style="margin: 0;">+<span id="LC140" class="line" lang="markdown">74.2 - 75.3 [19,953,105]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

141

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<pre style="margin: 0;">+<span id="LC141" class="line" lang="markdown">75.3 - 76.3 [21,729,076]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC142" class="line" lang="markdown">76.3 - 77.3 [23,635,419]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC143" class="line" lang="markdown">77.3 - 78.4 [24,208,910]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC144" class="line" lang="markdown">78.4 - 79.4 [29,229,242]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC145" class="line" lang="markdown">79.4 - 80.5 [30,320,254]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

146

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<pre style="margin: 0;">+<span id="LC146" class="line" lang="markdown">80.5 - 81.5 [31,582,509]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC147" class="line" lang="markdown">81.5 - 82.6 [34,303,771]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

148

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<pre style="margin: 0;">+<span id="LC148" class="line" lang="markdown">82.6 - 83.6 [35,740,373]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC149" class="line" lang="markdown">83.6 - 84.6 [35,843,870]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC150" class="line" lang="markdown">84.6 - 85.7 [34,414,639]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC151" class="line" lang="markdown">85.7 - 86.7 [31,090,589]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC152" class="line" lang="markdown">86.7 - 87.8 [24,992,027]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

153

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<pre style="margin: 0;">+<span id="LC153" class="line" lang="markdown">87.8 - 88.8 [16,361,297]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

154

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<pre style="margin: 0;">+<span id="LC154" class="line" lang="markdown">88.8 - 89.9 [ 8,641,030]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

155

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<pre style="margin: 0;">+<span id="LC155" class="line" lang="markdown">89.9 - 90.9 [ 2,927,227]: ∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

156

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<pre style="margin: 0;">+<span id="LC156" class="line" lang="markdown">90.9 - 91.9 [   875,281]: ∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

157

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<pre style="margin: 0;">+<span id="LC157" class="line" lang="markdown">91.9 - 93.0 [   204,049]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

158

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<pre style="margin: 0;">+<span id="LC158" class="line" lang="markdown">93.0 - 94.0 [    49,040]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

159

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<pre style="margin: 0;">+<span id="LC159" class="line" lang="markdown">94.0 - 95.1 [     6,461]: </span>

</pre>

</td>

</tr>

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<pre style="margin: 0;">+<span id="LC160" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC161" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC162" class="line" lang="markdown">Based on the histograms, I might choose the following conservative quality thresholds: <span class="sb" style="color: #d14;">`--min_length 5000 --min_mean_q 80 --min_window_q 65`</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC163" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC164" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC165" class="line" lang="markdown"><span class="nt" style="color: #000080;"><br><br><br></span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC166" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC167" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC168" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Example with Illumina reads as an external reference</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC169" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC170" class="line" lang="markdown">This example uses the same dataset as the previous one, but the qualities now come from k-mer matches to Illumina reads. The qualities are therefore different but the read length information is unchanged.</span>

</pre>

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<pre style="margin: 0;">+<span id="LC171" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC172" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">__Command__</span>:</span>

</pre>

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<pre style="margin: 0;">+<span id="LC173" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC174" class="line" lang="markdown">path/to/Filtlong/scripts/read_info_histograms.sh long_reads.fastq.gz illumina_1.fastq.gz illumina_2.fastq.gz</span>

</pre>

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<pre style="margin: 0;">+<span id="LC175" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC176" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC177" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">__Output__</span>:</span>

</pre>

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<pre style="margin: 0;">+<span id="LC178" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC179" class="line" lang="markdown">READ SET SUMMARY</span>

</pre>

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<pre style="margin: 0;">+<span id="LC180" class="line" lang="markdown">----------------</span>

</pre>

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<pre style="margin: 0;">+<span id="LC181" class="line" lang="markdown">number of reads: 62,313</span>

</pre>

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<pre style="margin: 0;">+<span id="LC182" class="line" lang="markdown">number of bases: 498,400,580</span>

</pre>

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183

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<pre style="margin: 0;">+<span id="LC183" class="line" lang="markdown">N50 read length: 16,730</span>

</pre>

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184

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<pre style="margin: 0;">+<span id="LC184" class="line" lang="markdown"></span>

</pre>

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185

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<pre style="margin: 0;">+<span id="LC185" class="line" lang="markdown"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

186

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<pre style="margin: 0;">+<span id="LC186" class="line" lang="markdown">READ LENGTHS</span>

</pre>

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187

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<pre style="margin: 0;">+<span id="LC187" class="line" lang="markdown">------------</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

188

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<pre style="margin: 0;">+<span id="LC188" class="line" lang="markdown">Each ∎ represents 1,044,446 bases</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

189

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<pre style="margin: 0;">+<span id="LC189" class="line" lang="markdown">     0 -   3799 [45,923,686]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

190

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<pre style="margin: 0;">+<span id="LC190" class="line" lang="markdown">  3799 -   7597 [73,111,261]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

191

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<pre style="margin: 0;">+<span id="LC191" class="line" lang="markdown">  7597 -  11396 [63,135,675]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

192

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<pre style="margin: 0;">+<span id="LC192" class="line" lang="markdown"> 11396 -  15195 [49,558,377]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

193

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<pre style="margin: 0;">+<span id="LC193" class="line" lang="markdown"> 15195 -  18994 [40,910,839]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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194

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<pre style="margin: 0;">+<span id="LC194" class="line" lang="markdown"> 18994 -  22792 [34,441,187]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

195

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<pre style="margin: 0;">+<span id="LC195" class="line" lang="markdown"> 22792 -  26591 [28,738,160]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

196

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<pre style="margin: 0;">+<span id="LC196" class="line" lang="markdown"> 26591 -  30390 [24,738,026]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

197

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<pre style="margin: 0;">+<span id="LC197" class="line" lang="markdown"> 30390 -  34189 [22,096,602]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

198

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<pre style="margin: 0;">+<span id="LC198" class="line" lang="markdown"> 34189 -  37987 [18,985,609]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC199" class="line" lang="markdown"> 37987 -  41786 [15,406,318]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC200" class="line" lang="markdown"> 41786 -  45585 [12,755,023]: ∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC201" class="line" lang="markdown"> 45585 -  49383 [12,919,019]: ∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

202

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<pre style="margin: 0;">+<span id="LC202" class="line" lang="markdown"> 49383 -  53182 [ 9,529,903]: ∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC203" class="line" lang="markdown"> 53182 -  56981 [ 7,744,484]: ∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

204

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC204" class="line" lang="markdown"> 56981 -  60780 [ 6,403,620]: ∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC205" class="line" lang="markdown"> 60780 -  64578 [ 5,626,494]: ∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC206" class="line" lang="markdown"> 64578 -  68377 [ 5,434,617]: ∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC207" class="line" lang="markdown"> 68377 -  72176 [ 3,851,906]: ∎∎∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC208" class="line" lang="markdown"> 72176 -  75974 [ 3,104,518]: ∎∎</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC209" class="line" lang="markdown"> 75974 -  79773 [ 2,723,174]: ∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC210" class="line" lang="markdown"> 79773 -  83572 [ 2,445,516]: ∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC211" class="line" lang="markdown"> 83572 -  87371 [ 1,622,746]: ∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC212" class="line" lang="markdown"> 87371 -  91169 [ 1,424,798]: ∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC213" class="line" lang="markdown"> 91169 -  94968 [ 1,018,819]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC214" class="line" lang="markdown"> 94968 -  98767 [ 1,254,227]: ∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC215" class="line" lang="markdown"> 98767 - 102566 [ 1,000,129]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

216

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC216" class="line" lang="markdown">102566 - 106364 [   206,593]: </span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC217" class="line" lang="markdown">106364 - 110163 [   217,310]: </span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC218" class="line" lang="markdown">110163 - 113962 [   561,474]: </span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC219" class="line" lang="markdown">113962 - 117760 [   233,150]: </span>

</pre>

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</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC220" class="line" lang="markdown">117760 - 121559 [   476,864]: </span>

</pre>

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</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC221" class="line" lang="markdown">121559 - 125358 [   248,209]: </span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC222" class="line" lang="markdown">125358 - 129157 [         0]: </span>

</pre>

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<pre style="margin: 0;">+<span id="LC223" class="line" lang="markdown">129157 - 132955 [   262,547]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC224" class="line" lang="markdown">132955 - 136754 [         0]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC225" class="line" lang="markdown">136754 - 140553 [   137,751]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC226" class="line" lang="markdown">140553 - 144352 [         0]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC227" class="line" lang="markdown">144352 - 148150 [         0]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC228" class="line" lang="markdown">148150 - 151949 [   151,949]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC229" class="line" lang="markdown"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC230" class="line" lang="markdown"></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC231" class="line" lang="markdown">MEAN QUALITIES</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC232" class="line" lang="markdown">--------------</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC233" class="line" lang="markdown">Each ∎ represents 677,887 bases</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC234" class="line" lang="markdown"> 0.0 -  2.5 [    67,263]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC235" class="line" lang="markdown"> 2.5 -  4.9 [    82,815]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC236" class="line" lang="markdown"> 4.9 -  7.4 [   256,950]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC237" class="line" lang="markdown"> 7.4 -  9.9 [   749,158]: ∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

238

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC238" class="line" lang="markdown"> 9.9 - 12.3 [ 1,152,658]: ∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC239" class="line" lang="markdown">12.3 - 14.8 [ 1,754,082]: ∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC240" class="line" lang="markdown">14.8 - 17.3 [ 3,059,964]: ∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC241" class="line" lang="markdown">17.3 - 19.7 [ 5,408,847]: ∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC242" class="line" lang="markdown">19.7 - 22.2 [ 7,510,681]: ∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC243" class="line" lang="markdown">22.2 - 24.6 [ 4,006,337]: ∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC244" class="line" lang="markdown">24.6 - 27.1 [ 2,801,778]: ∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC245" class="line" lang="markdown">27.1 - 29.6 [ 2,502,685]: ∎∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC246" class="line" lang="markdown">29.6 - 32.0 [ 3,258,647]: ∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC247" class="line" lang="markdown">32.0 - 34.5 [ 3,435,155]: ∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC248" class="line" lang="markdown">34.5 - 37.0 [ 4,278,777]: ∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

249

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<pre style="margin: 0;">+<span id="LC249" class="line" lang="markdown">37.0 - 39.4 [ 4,983,333]: ∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC250" class="line" lang="markdown">39.4 - 41.9 [ 6,439,521]: ∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

251

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<pre style="margin: 0;">+<span id="LC251" class="line" lang="markdown">41.9 - 44.4 [ 7,588,641]: ∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC252" class="line" lang="markdown">44.4 - 46.8 [ 8,908,943]: ∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

253

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<pre style="margin: 0;">+<span id="LC253" class="line" lang="markdown">46.8 - 49.3 [10,001,462]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC254" class="line" lang="markdown">49.3 - 51.8 [12,713,431]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC255" class="line" lang="markdown">51.8 - 54.2 [16,136,550]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC256" class="line" lang="markdown">54.2 - 56.7 [18,115,381]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC257" class="line" lang="markdown">56.7 - 59.1 [21,659,142]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC258" class="line" lang="markdown">59.1 - 61.6 [23,166,427]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC259" class="line" lang="markdown">61.6 - 64.1 [25,919,731]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC260" class="line" lang="markdown">64.1 - 66.5 [31,712,427]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC261" class="line" lang="markdown">66.5 - 69.0 [36,552,017]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC262" class="line" lang="markdown">69.0 - 71.5 [41,159,323]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC263" class="line" lang="markdown">71.5 - 73.9 [46,002,774]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC264" class="line" lang="markdown">73.9 - 76.4 [47,452,136]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC265" class="line" lang="markdown">76.4 - 78.9 [46,485,175]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC266" class="line" lang="markdown">78.9 - 81.3 [32,871,399]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC267" class="line" lang="markdown">81.3 - 83.8 [15,072,800]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC268" class="line" lang="markdown">83.8 - 86.3 [ 3,755,240]: ∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC269" class="line" lang="markdown">86.3 - 88.7 [   961,203]: ∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC270" class="line" lang="markdown">88.7 - 91.2 [   370,319]: </span>

</pre>

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<pre style="margin: 0;">+<span id="LC271" class="line" lang="markdown">91.2 - 93.7 [    36,939]: </span>

</pre>

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<pre style="margin: 0;">+<span id="LC272" class="line" lang="markdown">93.7 - 96.1 [     8,536]: </span>

</pre>

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<pre style="margin: 0;">+<span id="LC273" class="line" lang="markdown">96.1 - 98.6 [     1,933]: </span>

</pre>

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<pre style="margin: 0;">+<span id="LC274" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC275" class="line" lang="markdown"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC276" class="line" lang="markdown">WINDOW QUALITIES</span>

</pre>

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<pre style="margin: 0;">+<span id="LC277" class="line" lang="markdown">----------------</span>

</pre>

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<pre style="margin: 0;">+<span id="LC278" class="line" lang="markdown">Each ∎ represents 1,223,100 bases</span>

</pre>

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<pre style="margin: 0;">+<span id="LC279" class="line" lang="markdown"> 0.0 -  2.5 [85,617,025]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC280" class="line" lang="markdown"> 2.5 -  4.9 [ 4,646,208]: ∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC281" class="line" lang="markdown"> 4.9 -  7.4 [42,058,882]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<pre style="margin: 0;">+<span id="LC282" class="line" lang="markdown"> 7.4 -  9.9 [20,326,766]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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283

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<pre style="margin: 0;">+<span id="LC283" class="line" lang="markdown"> 9.9 - 12.3 [12,648,808]: ∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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284

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<pre style="margin: 0;">+<span id="LC284" class="line" lang="markdown">12.3 - 14.8 [33,893,701]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

285

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<pre style="margin: 0;">+<span id="LC285" class="line" lang="markdown">14.8 - 17.3 [24,865,373]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

286

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<pre style="margin: 0;">+<span id="LC286" class="line" lang="markdown">17.3 - 19.8 [20,757,969]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

287

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<pre style="margin: 0;">+<span id="LC287" class="line" lang="markdown">19.8 - 22.2 [24,508,676]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

288

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<pre style="margin: 0;">+<span id="LC288" class="line" lang="markdown">22.2 - 24.7 [24,211,150]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC289" class="line" lang="markdown">24.7 - 27.2 [22,883,942]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

290

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<pre style="margin: 0;">+<span id="LC290" class="line" lang="markdown">27.2 - 29.6 [25,860,478]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

291

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<pre style="margin: 0;">+<span id="LC291" class="line" lang="markdown">29.6 - 32.1 [21,054,189]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

292

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<pre style="margin: 0;">+<span id="LC292" class="line" lang="markdown">32.1 - 34.6 [20,389,975]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

293

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<pre style="margin: 0;">+<span id="LC293" class="line" lang="markdown">34.6 - 37.0 [17,721,925]: ∎∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

294

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<pre style="margin: 0;">+<span id="LC294" class="line" lang="markdown">37.0 - 39.5 [16,808,916]: ∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

295

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<pre style="margin: 0;">+<span id="LC295" class="line" lang="markdown">39.5 - 42.0 [14,247,451]: ∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC296" class="line" lang="markdown">42.0 - 44.5 [16,429,129]: ∎∎∎∎∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC297" class="line" lang="markdown">44.5 - 46.9 [11,544,406]: ∎∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC298" class="line" lang="markdown">46.9 - 49.4 [ 9,910,130]: ∎∎∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC299" class="line" lang="markdown">49.4 - 51.9 [ 7,622,653]: ∎∎∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC300" class="line" lang="markdown">51.9 - 54.3 [ 5,814,027]: ∎∎∎∎</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC301" class="line" lang="markdown">54.3 - 56.8 [ 4,865,746]: ∎∎∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

302

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<pre style="margin: 0;">+<span id="LC302" class="line" lang="markdown">56.8 - 59.3 [ 3,159,894]: ∎∎</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

303

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC303" class="line" lang="markdown">59.3 - 61.8 [ 2,174,103]: ∎</span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

304

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<pre style="margin: 0;">+<span id="LC304" class="line" lang="markdown">61.8 - 64.2 [ 1,399,105]: ∎</span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC305" class="line" lang="markdown">64.2 - 66.7 [ 1,003,958]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC306" class="line" lang="markdown">66.7 - 69.2 [   637,184]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC307" class="line" lang="markdown">69.2 - 71.6 [   508,873]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC308" class="line" lang="markdown">71.6 - 74.1 [   255,636]: </span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC309" class="line" lang="markdown">74.1 - 76.6 [   183,048]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

310

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<pre style="margin: 0;">+<span id="LC310" class="line" lang="markdown">76.6 - 79.0 [   145,158]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC311" class="line" lang="markdown">79.0 - 81.5 [    92,925]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

312

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<pre style="margin: 0;">+<span id="LC312" class="line" lang="markdown">81.5 - 84.0 [    61,294]: </span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC313" class="line" lang="markdown">84.0 - 86.5 [    46,942]: </span>

</pre>

</td>

</tr>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC314" class="line" lang="markdown">86.5 - 88.9 [    20,743]: </span>

</pre>

</td>

</tr>

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<td class="new_line diff-line-num new" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC315" class="line" lang="markdown">88.9 - 91.4 [    14,950]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC316" class="line" lang="markdown">91.4 - 93.9 [     5,187]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC317" class="line" lang="markdown">93.9 - 96.3 [     3,171]: </span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC318" class="line" lang="markdown">96.3 - 98.8 [       884]:</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC319" class="line" lang="markdown"><span class="p">```</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC320" class="line" lang="markdown"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC321" class="line" lang="markdown">There is an interesting bimodel distribution in the mean quality histogram. I hypothesise that the larger (higher quality) component is from real reads, while the smaller (lower quality) component is junk. To filter conservatively, I would perhaps just use <span class="sb" style="color: #d14;">`--min_mean_q 30`</span>. To filter more aggressively, I would also use <span class="sb" style="color: #d14;">`--min_window_q 5`</span>.</span></pre>

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<br>

</li>

<li id="9600c7f8a37269b653129d7ba2379ad83b4b2f54">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#9600c7f8a37269b653129d7ba2379ad83b4b2f54"><strong>scripts/histogram.py</strong></a>

<hr>

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1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/env python</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Copyright 2010 Bitly</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

5

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

6

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Licensed under the Apache License, Version 2.0 (the "License"); you may</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

7

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># not use this file except in compliance with the License. You may obtain</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

8

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># a copy of the License at</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

9

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#     http://www.apache.org/licenses/LICENSE-2.0</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Unless required by applicable law or agreed to in writing, software</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

13

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># distributed under the License is distributed on an "AS IS" BASIS, WITHOUT</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

14

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

15

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># License for the specific language governing permissions and limitations</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># under the License.</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"><span class="s" style="color: #d14;">Generate a text format histogram</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"><span class="s" style="color: #d14;">This is a loose port to python of the Perl version at</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"><span class="s" style="color: #d14;">http://www.pandamatak.com/people/anand/xfer/histo</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"><span class="s" style="color: #d14;">https://github.com/bitly/data_hacks</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"><span class="s" style="color: #d14;">This version of the script comes with Filtlong (github.com/rrwick/Filtlong)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"><span class="s" style="color: #d14;">and was slightly modified to better suit statistics of long sequencing reads.</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">__future__</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">print_function</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">__future__</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">division</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">decimal</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Decimal</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">logging</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">math</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">optparse</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">OptionParser</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">collections</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">namedtuple</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">MVSD</span><span class="p">(</span><span class="nb" style="color: #0086b3;">object</span><span class="p">):</span></span>

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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python">    <span class="s" style="color: #d14;">"A class that calculates a running Mean / Variance / Standard Deviation"</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>

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<td class="new_line diff-line-num new" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python">        <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">is_started</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>

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<td class="new_line diff-line-num new" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python">        <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">ss</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">)</span>  <span class="c1" style="color: #998; font-style: italic;"># (running) sum of square deviations from mean</span></span>

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<td class="new_line diff-line-num new" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python">        <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">)</span>  <span class="c1" style="color: #998; font-style: italic;"># (running) mean</span></span>

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<td class="new_line diff-line-num new" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python">        <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">total_w</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">)</span>  <span class="c1" style="color: #998; font-style: italic;"># weight of items seen</span></span>

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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">add</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">x</span><span class="p">,</span> <span class="n" style="color: #333;">w</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">):</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python">        <span class="s" style="color: #d14;">"add another datapoint to the Mean / Variance / Standard Deviation"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span> <span class="n" style="color: #333;">Decimal</span><span class="p">):</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python">            <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">is_started</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">x</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">ss</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">total_w</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">w</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">is_started</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python">        <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python">            <span class="n" style="color: #333;">temp_w</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">total_w</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">w</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC59" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">ss</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">total_w</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">w</span> <span class="o" style="font-weight: 600;">*</span> <span class="p">(</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">-</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">m</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC60" class="line" lang="python">                        <span class="p">(</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">-</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">m</span><span class="p">))</span> <span class="o" style="font-weight: 600;">//</span> <span class="n" style="color: #333;">temp_w</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC61" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">(</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">-</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">m</span><span class="p">)</span> <span class="o" style="font-weight: 600;">//</span> <span class="n" style="color: #333;">temp_w</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">total_w</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">temp_w</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">var</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC65" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">ss</span> <span class="o" style="font-weight: 600;">//</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">total_w</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC67" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">sd</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">math</span><span class="p">.</span><span class="n" style="color: #333;">sqrt</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">var</span><span class="p">())</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">mean</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC71" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">m</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"><span class="n" style="color: #333;">DataPoint</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">namedtuple</span><span class="p">(</span><span class="s" style="color: #d14;">'DataPoint'</span><span class="p">,</span> <span class="p">[</span><span class="s" style="color: #d14;">'value'</span><span class="p">,</span> <span class="s" style="color: #d14;">'count'</span><span class="p">])</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC74" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

75

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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

76

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<pre style="margin: 0;">+<span id="LC76" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_mvsd</span><span class="p">():</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

77

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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python">    <span class="n" style="color: #333;">mvsd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">MVSD</span><span class="p">()</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

78

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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python">    <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">10</span><span class="p">):</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

79

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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python">        <span class="n" style="color: #333;">mvsd</span><span class="p">.</span><span class="n" style="color: #333;">add</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">)</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

80

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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

81

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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python">    <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'%.2f'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">mvsd</span><span class="p">.</span><span class="n" style="color: #333;">mean</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"4.50"</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

82

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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python">    <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'%.2f'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">mvsd</span><span class="p">.</span><span class="n" style="color: #333;">var</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"8.25"</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

83

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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python">    <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'%.14f'</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">mvsd</span><span class="p">.</span><span class="n" style="color: #333;">sd</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"2.87228132326901"</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

84

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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

85

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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

86

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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">load_stream</span><span class="p">(</span><span class="n" style="color: #333;">input_stream</span><span class="p">,</span> <span class="n" style="color: #333;">agg_value_key</span><span class="p">,</span> <span class="n" style="color: #333;">agg_key_value</span><span class="p">):</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

87

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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python">    <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">line</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">input_stream</span><span class="p">:</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

88

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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python">        <span class="n" style="color: #333;">clean_line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">line</span><span class="p">.</span><span class="n" style="color: #333;">strip</span><span class="p">()</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

89

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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">clean_line</span><span class="p">:</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python">            <span class="c1" style="color: #998; font-style: italic;"># skip empty lines (ie: newlines)</span></span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

91

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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python">            <span class="k" style="font-weight: 600;">continue</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

92

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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">clean_line</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="s" style="color: #d14;">'"'</span><span class="p">,</span> <span class="s" style="color: #d14;">"'"</span><span class="p">]:</span></span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

93

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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python">            <span class="n" style="color: #333;">clean_line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">clean_line</span><span class="p">.</span><span class="n" style="color: #333;">strip</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">'"</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

94

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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python">        <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

95

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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python">            <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">agg_key_value</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

96

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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python">                <span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">clean_line</span><span class="p">.</span><span class="n" style="color: #333;">rstrip</span><span class="p">().</span><span class="n" style="color: #333;">rsplit</span><span class="p">(</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

97

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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python">                <span class="k" style="font-weight: 600;">yield</span> <span class="n" style="color: #333;">DataPoint</span><span class="p">(</span><span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">))</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

98

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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python">            <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">agg_value_key</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

99

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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python">                <span class="n" style="color: #333;">value</span><span class="p">,</span> <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">clean_line</span><span class="p">.</span><span class="n" style="color: #333;">lstrip</span><span class="p">().</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

100

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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python">                <span class="k" style="font-weight: 600;">yield</span> <span class="n" style="color: #333;">DataPoint</span><span class="p">(</span><span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">))</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

101

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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python">            <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

102

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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python">                <span class="k" style="font-weight: 600;">yield</span> <span class="n" style="color: #333;">DataPoint</span><span class="p">(</span><span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="n" style="color: #333;">clean_line</span><span class="p">),</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

103

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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python">        <span class="k" style="font-weight: 600;">except</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

104

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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python">            <span class="n" style="color: #333;">logging</span><span class="p">.</span><span class="n" style="color: #333;">exception</span><span class="p">(</span><span class="s" style="color: #d14;">'failed %r'</span><span class="p">,</span> <span class="n" style="color: #333;">line</span><span class="p">)</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python">            <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"invalid line %r"</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">file</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stderr</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

106

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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

107

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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">median</span><span class="p">(</span><span class="n" style="color: #333;">values</span><span class="p">,</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

109

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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">key</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python">        <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span>  <span class="c1" style="color: #998; font-style: italic;"># map and sort accept None as identity</span></span>

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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python">    <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">values</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">2</span><span class="p">:</span></span>

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<td class="new_line diff-line-num new" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC113" class="line" lang="python">        <span class="n" style="color: #333;">median_indeces</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">length</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>

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<td class="new_line diff-line-num new" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC114" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC115" class="line" lang="python">        <span class="n" style="color: #333;">median_indeces</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">length</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">length</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC116" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC117" class="line" lang="python">    <span class="n" style="color: #333;">values</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">sorted</span><span class="p">(</span><span class="n" style="color: #333;">values</span><span class="p">,</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">key</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">sum</span><span class="p">(</span><span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python">                   <span class="p">[</span><span class="n" style="color: #333;">values</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">median_indeces</span><span class="p">]))</span> <span class="o" style="font-weight: 600;">//</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">median_indeces</span><span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC121" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_median</span><span class="p">():</span></span>

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<pre style="margin: 0;">+<span id="LC123" class="line" lang="python">    <span class="k" style="font-weight: 600;">assert</span> <span class="mi" style="color: #099;">6</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">median</span><span class="p">([</span><span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">])</span>  <span class="c1" style="color: #998; font-style: italic;"># odd-sized list</span></span>

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<pre style="margin: 0;">+<span id="LC124" class="line" lang="python">    <span class="k" style="font-weight: 600;">assert</span> <span class="mi" style="color: #099;">4</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">median</span><span class="p">([</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="mi" style="color: #099;">10</span><span class="p">])</span>  <span class="c1" style="color: #998; font-style: italic;"># even-sized int list. (4+5)/2 = 4</span></span>

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<pre style="margin: 0;">+<span id="LC125" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># even-sized float list. (4.0+5)/2 = 4.5</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC126" class="line" lang="python">    <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">"4.50"</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"%.2f"</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">median</span><span class="p">([</span><span class="mf" style="color: #099;">4.0</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="mi" style="color: #099;">10</span><span class="p">])</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC127" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC128" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC129" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">histogram</span><span class="p">(</span><span class="n" style="color: #333;">stream</span><span class="p">,</span> <span class="n" style="color: #333;">options</span><span class="p">):</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC130" class="line" lang="python">    <span class="s" style="color: #d14;">"""</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC131" class="line" lang="python"><span class="s" style="color: #d14;">    Loop over the stream and add each entry to the dataset, printing out at the</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC132" class="line" lang="python"><span class="s" style="color: #d14;">    end.</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC134" class="line" lang="python"><span class="s" style="color: #d14;">    stream yields Decimal()</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"><span class="s" style="color: #d14;">    """</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC136" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="nb" style="color: #0086b3;">min</span> <span class="ow" style="font-weight: 600;">or</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="nb" style="color: #0086b3;">max</span><span class="p">:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC137" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># glob the iterator here so we can do min/max on it</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC138" class="line" lang="python">        <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">stream</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python">        <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">stream</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python">    <span class="n" style="color: #333;">bucket_scale</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC142" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC143" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="nb" style="color: #0086b3;">min</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python">        <span class="n" style="color: #333;">min_v</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">.</span><span class="nb" style="color: #0086b3;">min</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

145

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<pre style="margin: 0;">+<span id="LC145" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

146

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<pre style="margin: 0;">+<span id="LC146" class="line" lang="python">        <span class="n" style="color: #333;">min_v</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">min</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">.</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

147

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<pre style="margin: 0;">+<span id="LC147" class="line" lang="python">        <span class="n" style="color: #333;">min_v</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">min_v</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

148

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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="nb" style="color: #0086b3;">max</span><span class="p">:</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

149

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<pre style="margin: 0;">+<span id="LC149" class="line" lang="python">        <span class="n" style="color: #333;">max_v</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">.</span><span class="nb" style="color: #0086b3;">max</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

150

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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

151

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<pre style="margin: 0;">+<span id="LC151" class="line" lang="python">        <span class="n" style="color: #333;">max_v</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">max</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">lambda</span> <span class="n" style="color: #333;">x</span><span class="p">:</span> <span class="n" style="color: #333;">x</span><span class="p">.</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

152

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<pre style="margin: 0;">+<span id="LC152" class="line" lang="python">        <span class="n" style="color: #333;">max_v</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">max_v</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

153

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC153" class="line" lang="python"></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

154

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<pre style="margin: 0;">+<span id="LC154" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">max_v</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">min_v</span><span class="p">:</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

155

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<pre style="margin: 0;">+<span id="LC155" class="line" lang="python">        <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">'max must be > min. max:%s min:%s'</span> <span class="o" style="font-weight: 600;">%</span> <span class="p">(</span><span class="n" style="color: #333;">max_v</span><span class="p">,</span> <span class="n" style="color: #333;">min_v</span><span class="p">))</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

156

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC156" class="line" lang="python">    <span class="n" style="color: #333;">diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">max_v</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">min_v</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

157

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC157" class="line" lang="python"></span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

158

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<pre style="margin: 0;">+<span id="LC158" class="line" lang="python">    <span class="n" style="color: #333;">boundaries</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC159" class="line" lang="python">    <span class="n" style="color: #333;">bucket_counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

160

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<pre style="margin: 0;">+<span id="LC160" class="line" lang="python">    <span class="n" style="color: #333;">buckets</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

161

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC161" class="line" lang="python"></span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC162" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">custbuckets</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC163" class="line" lang="python">        <span class="n" style="color: #333;">bound</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">custbuckets</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">','</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

164

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<pre style="margin: 0;">+<span id="LC164" class="line" lang="python">        <span class="n" style="color: #333;">bound_sort</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">sorted</span><span class="p">(</span><span class="nb" style="color: #0086b3;">map</span><span class="p">(</span><span class="n" style="color: #333;">Decimal</span><span class="p">,</span> <span class="n" style="color: #333;">bound</span><span class="p">))</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC165" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

166

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<pre style="margin: 0;">+<span id="LC166" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># if the last value is smaller than the maximum, replace it</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC167" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bound_sort</span><span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">max_v</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

168

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<pre style="margin: 0;">+<span id="LC168" class="line" lang="python">            <span class="n" style="color: #333;">bound_sort</span><span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">max_v</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC169" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC170" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># iterate through the sorted list and append to boundaries</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

171

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<pre style="margin: 0;">+<span id="LC171" class="line" lang="python">        <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">bound_sort</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC172" class="line" lang="python">            <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">min_v</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">max_v</span><span class="p">:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC173" class="line" lang="python">                <span class="n" style="color: #333;">boundaries</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC174" class="line" lang="python">            <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">max_v</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC175" class="line" lang="python">                <span class="n" style="color: #333;">boundaries</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">max_v</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC176" class="line" lang="python">                <span class="k" style="font-weight: 600;">break</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC177" class="line" lang="python"></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC178" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># beware: the min_v is not included in the boundaries,</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC179" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># so no need to do a -1!</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC180" class="line" lang="python">        <span class="n" style="color: #333;">bucket_counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">boundaries</span><span class="p">))]</span></span>

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<pre style="margin: 0;">+<span id="LC181" class="line" lang="python">        <span class="n" style="color: #333;">buckets</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">boundaries</span><span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC182" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">logscale</span><span class="p">:</span></span>

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<pre style="margin: 0;">+<span id="LC183" class="line" lang="python">        <span class="n" style="color: #333;">buckets</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">buckets</span> <span class="ow" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">buckets</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">or</span> <span class="mi" style="color: #099;">10</span></span>

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<pre style="margin: 0;">+<span id="LC184" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">buckets</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">0</span><span class="p">:</span></span>

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<pre style="margin: 0;">+<span id="LC185" class="line" lang="python">            <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">'# of buckets must be > 0'</span><span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC186" class="line" lang="python"></span>

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<pre style="margin: 0;">+<span id="LC187" class="line" lang="python">        <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">first_bucket_size</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">n</span><span class="p">):</span></span>

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<pre style="margin: 0;">+<span id="LC188" class="line" lang="python">            <span class="s" style="color: #d14;">"""Logarithmic buckets means, the size of bucket i+1 is twice</span></span>

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<pre style="margin: 0;">+<span id="LC189" class="line" lang="python"><span class="s" style="color: #d14;">            the size of bucket i.</span></span>

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<pre style="margin: 0;">+<span id="LC190" class="line" lang="python"><span class="s" style="color: #d14;">            For k+1 buckets whose sum is n, we have</span></span>

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<pre style="margin: 0;">+<span id="LC191" class="line" lang="python"><span class="s" style="color: #d14;">            (note, k+1 buckets, since 0 is counted as well):</span></span>

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<pre style="margin: 0;">+<span id="LC192" class="line" lang="python"><span class="s" style="color: #d14;">                \sum_{i=0}^{k} x*2^i   = n</span></span>

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<pre style="margin: 0;">+<span id="LC193" class="line" lang="python"><span class="s" style="color: #d14;">                x * \sum_{i=0}^{k} 2^i = n</span></span>

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<pre style="margin: 0;">+<span id="LC194" class="line" lang="python"><span class="s" style="color: #d14;">                x * (2^{k+1} - 1)      = n</span></span>

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<pre style="margin: 0;">+<span id="LC195" class="line" lang="python"><span class="s" style="color: #d14;">                x = n/(2^{k+1} - 1)</span></span>

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<pre style="margin: 0;">+<span id="LC196" class="line" lang="python"><span class="s" style="color: #d14;">            """</span></span>

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<pre style="margin: 0;">+<span id="LC197" class="line" lang="python">            <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">/</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">**</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">)</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC198" class="line" lang="python"></span>

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<pre style="margin: 0;">+<span id="LC199" class="line" lang="python">        <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">log_steps</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">n</span><span class="p">):</span></span>

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<pre style="margin: 0;">+<span id="LC200" class="line" lang="python">            <span class="s" style="color: #d14;">"k logarithmic steps whose sum is n"</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC201" class="line" lang="python">            <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">first_bucket_size</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC202" class="line" lang="python">            <span class="nb" style="color: #0086b3;">sum</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>

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<td class="new_line diff-line-num new" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC203" class="line" lang="python">            <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">):</span></span>

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<td class="new_line diff-line-num new" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC204" class="line" lang="python">                <span class="nb" style="color: #0086b3;">sum</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">x</span></span>

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<pre style="margin: 0;">+<span id="LC205" class="line" lang="python">                <span class="k" style="font-weight: 600;">yield</span> <span class="nb" style="color: #0086b3;">sum</span></span>

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<pre style="margin: 0;">+<span id="LC206" class="line" lang="python">        <span class="n" style="color: #333;">bucket_counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">buckets</span><span class="p">)]</span></span>

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<pre style="margin: 0;">+<span id="LC207" class="line" lang="python">        <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">step</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">log_steps</span><span class="p">(</span><span class="n" style="color: #333;">buckets</span><span class="p">,</span> <span class="n" style="color: #333;">diff</span><span class="p">):</span></span>

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<pre style="margin: 0;">+<span id="LC208" class="line" lang="python">            <span class="n" style="color: #333;">boundaries</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">min_v</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">step</span><span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC209" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC210" class="line" lang="python">        <span class="n" style="color: #333;">buckets</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">buckets</span> <span class="ow" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">buckets</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">or</span> <span class="mi" style="color: #099;">10</span></span>

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<pre style="margin: 0;">+<span id="LC211" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">buckets</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">0</span><span class="p">:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC212" class="line" lang="python">            <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">'# of buckets must be > 0'</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC213" class="line" lang="python">        <span class="n" style="color: #333;">step</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">diff</span> <span class="o" style="font-weight: 600;">//</span> <span class="n" style="color: #333;">buckets</span></span>

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<pre style="margin: 0;">+<span id="LC214" class="line" lang="python">        <span class="n" style="color: #333;">bucket_counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">buckets</span><span class="p">)]</span></span>

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<pre style="margin: 0;">+<span id="LC215" class="line" lang="python">        <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">buckets</span><span class="p">):</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC216" class="line" lang="python">            <span class="n" style="color: #333;">boundaries</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">min_v</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="n" style="color: #333;">step</span> <span class="o" style="font-weight: 600;">*</span> <span class="p">(</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">)))</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC217" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC218" class="line" lang="python">    <span class="n" style="color: #333;">skipped</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC219" class="line" lang="python">    <span class="n" style="color: #333;">samples</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC220" class="line" lang="python">    <span class="n" style="color: #333;">mvsd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">MVSD</span><span class="p">()</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC221" class="line" lang="python">    <span class="n" style="color: #333;">accepted_data</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC222" class="line" lang="python">    <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">record</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">data</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC223" class="line" lang="python">        <span class="n" style="color: #333;">samples</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">record</span><span class="p">.</span><span class="n" style="color: #333;">count</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC224" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">mvsd</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC225" class="line" lang="python">            <span class="n" style="color: #333;">mvsd</span><span class="p">.</span><span class="n" style="color: #333;">add</span><span class="p">(</span><span class="n" style="color: #333;">record</span><span class="p">.</span><span class="n" style="color: #333;">value</span><span class="p">,</span> <span class="n" style="color: #333;">record</span><span class="p">.</span><span class="n" style="color: #333;">count</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC226" class="line" lang="python">            <span class="n" style="color: #333;">accepted_data</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">record</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC227" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># find the bucket this goes in</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC228" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">record</span><span class="p">.</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">min_v</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">record</span><span class="p">.</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">max_v</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC229" class="line" lang="python">            <span class="n" style="color: #333;">skipped</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">record</span><span class="p">.</span><span class="n" style="color: #333;">count</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC230" class="line" lang="python">            <span class="k" style="font-weight: 600;">continue</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC231" class="line" lang="python">        <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">bucket_postion</span><span class="p">,</span> <span class="n" style="color: #333;">boundary</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">enumerate</span><span class="p">(</span><span class="n" style="color: #333;">boundaries</span><span class="p">):</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC232" class="line" lang="python">            <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">record</span><span class="p">.</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">boundary</span><span class="p">:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC233" class="line" lang="python">                <span class="n" style="color: #333;">bucket_counts</span><span class="p">[</span><span class="n" style="color: #333;">bucket_postion</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">record</span><span class="p">.</span><span class="n" style="color: #333;">count</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC234" class="line" lang="python">                <span class="k" style="font-weight: 600;">break</span></span>

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<pre style="margin: 0;">+<span id="LC235" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC236" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># auto-pick the hash scale</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC237" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">max</span><span class="p">(</span><span class="n" style="color: #333;">bucket_counts</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">70</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC238" class="line" lang="python">        <span class="n" style="color: #333;">bucket_scale</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="nb" style="color: #0086b3;">max</span><span class="p">(</span><span class="n" style="color: #333;">bucket_counts</span><span class="p">)</span> <span class="o" style="font-weight: 600;">//</span> <span class="mi" style="color: #099;">70</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC239" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC240" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># print("# NumSamples = %d; Min = %0.2f; Max = %0.2f" %</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC241" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#       (samples, min_v, max_v))</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC242" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># if skipped:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC243" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#     print("# %d value%s outside of min/max" %</span></span>

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<td class="new_line diff-line-num new" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC244" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#           (skipped, skipped > 1 and 's' or ''))</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC245" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># if options.mvsd:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC246" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#     print("# Mean = %f; Variance = %f; SD = %f; Median %f" %</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC247" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#           (mvsd.mean(), mvsd.var(), mvsd.sd(),</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC248" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#            median(accepted_data, key=lambda x: x.value)))</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC249" class="line" lang="python">    <span class="n" style="color: #333;">bucket_scale_str</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"{:,}"</span><span class="p">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">bucket_scale</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC250" class="line" lang="python">    <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"Each "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">dot</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">" represents %s bases"</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">bucket_scale_str</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC251" class="line" lang="python">    <span class="n" style="color: #333;">bucket_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">min_v</span></span>

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<pre style="margin: 0;">+<span id="LC252" class="line" lang="python">    <span class="n" style="color: #333;">bucket_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">min_v</span></span>

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<pre style="margin: 0;">+<span id="LC253" class="line" lang="python">    <span class="n" style="color: #333;">percentage</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">""</span></span>

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<pre style="margin: 0;">+<span id="LC254" class="line" lang="python"></span>

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<pre style="margin: 0;">+<span id="LC255" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># Allocate however many characters to the bucket count formed as are needed</span></span>

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<pre style="margin: 0;">+<span id="LC256" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># for the largest value.</span></span>

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<pre style="margin: 0;">+<span id="LC257" class="line" lang="python">    <span class="n" style="color: #333;">largest_bucket_count</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">max</span><span class="p">(</span><span class="n" style="color: #333;">bucket_counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">buckets</span><span class="p">))</span></span>

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<pre style="margin: 0;">+<span id="LC258" class="line" lang="python">    <span class="n" style="color: #333;">bucket_count_chars</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="s" style="color: #d14;">"{:,}"</span><span class="p">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">largest_bucket_count</span><span class="p">))</span></span>

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<pre style="margin: 0;">+<span id="LC259" class="line" lang="python">    <span class="n" style="color: #333;">bucket_count_format</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"{:"</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">bucket_count_chars</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">",}"</span></span>

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<pre style="margin: 0;">+<span id="LC260" class="line" lang="python">    </span>

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<pre style="margin: 0;">+<span id="LC261" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># If the largest bucket is large, then assume we're looking at read lengths</span></span>

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<pre style="margin: 0;">+<span id="LC262" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># and format bucket ranges as integers. If it's small, assume we're looking</span></span>

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<td class="new_line diff-line-num new" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC263" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># at qualitys and format the ranges with decimals.</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC264" class="line" lang="python">    <span class="n" style="color: #333;">largest_bucket</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">max</span><span class="p">(</span><span class="n" style="color: #333;">boundaries</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">buckets</span><span class="p">))</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC265" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">largest_bucket</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">1000</span><span class="p">:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC266" class="line" lang="python">        <span class="n" style="color: #333;">largest_bucket_chars</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="s" style="color: #d14;">"%.0f"</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">largest_bucket</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC267" class="line" lang="python">        <span class="n" style="color: #333;">bucket_format</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"%"</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">largest_bucket_chars</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">".0f"</span></span>

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<pre style="margin: 0;">+<span id="LC268" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC269" class="line" lang="python">        <span class="n" style="color: #333;">largest_bucket_chars</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="s" style="color: #d14;">"%.1f"</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">largest_bucket</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC270" class="line" lang="python">        <span class="n" style="color: #333;">bucket_format</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"%"</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">largest_bucket_chars</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">".1f"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC271" class="line" lang="python"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC272" class="line" lang="python">    <span class="n" style="color: #333;">format_string</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bucket_format</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">' - '</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">bucket_format</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">' [%s]: %s%s'</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC273" class="line" lang="python">    <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">bucket</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="n" style="color: #333;">buckets</span><span class="p">):</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC274" class="line" lang="python">        <span class="n" style="color: #333;">bucket_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bucket_max</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC275" class="line" lang="python">        <span class="n" style="color: #333;">bucket_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">boundaries</span><span class="p">[</span><span class="n" style="color: #333;">bucket</span><span class="p">]</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC276" class="line" lang="python">        <span class="n" style="color: #333;">bucket_count</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bucket_counts</span><span class="p">[</span><span class="n" style="color: #333;">bucket</span><span class="p">]</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC277" class="line" lang="python">        <span class="n" style="color: #333;">bucket_count_str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bucket_count_format</span><span class="p">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">bucket_count</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC278" class="line" lang="python">        <span class="n" style="color: #333;">star_count</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC279" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bucket_count</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC280" class="line" lang="python">            <span class="n" style="color: #333;">star_count</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bucket_count</span> <span class="o" style="font-weight: 600;">//</span> <span class="n" style="color: #333;">bucket_scale</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC281" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">percentage</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC282" class="line" lang="python">            <span class="n" style="color: #333;">percentage</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" (%0.2f%%)"</span> <span class="o" style="font-weight: 600;">%</span> <span class="p">(</span><span class="mi" style="color: #099;">100</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="n" style="color: #333;">bucket_count</span><span class="p">)</span> <span class="o" style="font-weight: 600;">/</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC283" class="line" lang="python">                                         <span class="n" style="color: #333;">Decimal</span><span class="p">(</span><span class="n" style="color: #333;">samples</span><span class="p">))</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC284" class="line" lang="python">        <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="n" style="color: #333;">format_string</span> <span class="o" style="font-weight: 600;">%</span> <span class="p">(</span><span class="n" style="color: #333;">bucket_min</span><span class="p">,</span> <span class="n" style="color: #333;">bucket_max</span><span class="p">,</span> <span class="n" style="color: #333;">bucket_count_str</span><span class="p">,</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC285" class="line" lang="python">                               <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">dot</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">star_count</span><span class="p">,</span> <span class="n" style="color: #333;">percentage</span><span class="p">))</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC286" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC287" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC288" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"__main__"</span><span class="p">:</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC289" class="line" lang="python">    <span class="n" style="color: #333;">parser</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">OptionParser</span><span class="p">()</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC290" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">usage</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"cat data | %prog [options]"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC291" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-a"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--agg"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"agg_value_key"</span><span class="p">,</span> <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC292" class="line" lang="python">                      <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Two column input format, "</span> <span class="o" style="font-weight: 600;">+</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC293" class="line" lang="python">                      <span class="s" style="color: #d14;">"space seperated with value<space>key"</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC294" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-A"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--agg-key-value"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"agg_key_value"</span><span class="p">,</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC295" class="line" lang="python">                      <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Two column "</span> <span class="o" style="font-weight: 600;">+</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC296" class="line" lang="python">                      <span class="s" style="color: #d14;">"input format, space seperated with key<space>value"</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC297" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-m"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--min"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"min"</span><span class="p">,</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC298" class="line" lang="python">                      <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"minimum value for graph"</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC299" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-x"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--max"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"max"</span><span class="p">,</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC300" class="line" lang="python">                      <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"maximum value for graph"</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC301" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-b"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--buckets"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"buckets"</span><span class="p">,</span></span>

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<pre style="margin: 0;">+<span id="LC302" class="line" lang="python">                      <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Number of buckets to use for the histogram"</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC303" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-l"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--logscale"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"logscale"</span><span class="p">,</span> <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>

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<pre style="margin: 0;">+<span id="LC304" class="line" lang="python">                      <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC305" class="line" lang="python">                      <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Buckets grow in logarithmic scale"</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC306" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-B"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--custom-buckets"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"custbuckets"</span><span class="p">,</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC307" class="line" lang="python">                      <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Comma seperated list of bucket "</span> <span class="o" style="font-weight: 600;">+</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC308" class="line" lang="python">                      <span class="s" style="color: #d14;">"edges for the histogram"</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC309" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"--no-mvsd"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"mvsd"</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"store_false"</span><span class="p">,</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC310" class="line" lang="python">                      <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Disable the calculation of Mean, "</span> <span class="o" style="font-weight: 600;">+</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC311" class="line" lang="python">                      <span class="s" style="color: #d14;">"Variance and SD (improves performance)"</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC312" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-f"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--bucket-format"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"format"</span><span class="p">,</span> <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"%10.2f"</span><span class="p">,</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC313" class="line" lang="python">                      <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"format for bucket numbers"</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC314" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"-p"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--percentage"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"percentage"</span><span class="p">,</span> <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC315" class="line" lang="python">                      <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"List percentage for each bar"</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC316" class="line" lang="python">    <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_option</span><span class="p">(</span><span class="s" style="color: #d14;">"--dot"</span><span class="p">,</span> <span class="n" style="color: #333;">dest</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"dot"</span><span class="p">,</span> <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'∎'</span><span class="p">,</span> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Dot representation"</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC317" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC318" class="line" lang="python">    <span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">args</span><span class="p">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">parse_args</span><span class="p">()</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

319

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<pre style="margin: 0;">+<span id="LC319" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdin</span><span class="p">.</span><span class="n" style="color: #333;">isatty</span><span class="p">():</span></span>

</pre>

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320

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<pre style="margin: 0;">+<span id="LC320" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># if isatty() that means it's run without anything piped into it</span></span>

</pre>

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321

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<pre style="margin: 0;">+<span id="LC321" class="line" lang="python">        <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">print_usage</span><span class="p">()</span></span>

</pre>

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322

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<pre style="margin: 0;">+<span id="LC322" class="line" lang="python">        <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"for more help use --help"</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC323" class="line" lang="python">        <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="nb" style="color: #0086b3;">exit</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

324

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<pre style="margin: 0;">+<span id="LC324" class="line" lang="python">    <span class="n" style="color: #333;">histogram</span><span class="p">(</span><span class="n" style="color: #333;">load_stream</span><span class="p">(</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">stdin</span><span class="p">,</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">agg_value_key</span><span class="p">,</span></span>

</pre>

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325

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<pre style="margin: 0;">+<span id="LC325" class="line" lang="python">                          <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">agg_key_value</span><span class="p">),</span> <span class="n" style="color: #333;">options</span><span class="p">)</span></span></pre>

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<br>

</li>

<li id="00f0081fdcc29acac8e618c176f91ea25c7b3e6d">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#00f0081fdcc29acac8e618c176f91ea25c7b3e6d"><strong>scripts/read_info_histograms.sh</strong></a>

<hr>

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1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/usr/bin/env bash</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

2

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">long_reads</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$1</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">illumina_1</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$2</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

5

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"><span class="nv" style="color: #008080;">illumina_2</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$3</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

6

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"></span>

</pre>

</td>

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<td class="new_line diff-line-num new" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

7

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Get the directory of this script.</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

8

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="nv" style="color: #008080;">script_dir</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="si" style="color: #d14;">$(</span> <span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="si" style="color: #d14;">$(</span> <span class="nb" style="color: #0086b3;">dirname</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">BASH_SOURCE</span><span class="p">[0]</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="si" style="color: #d14;">)</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">&&</span> <span class="nb" style="color: #0086b3;">pwd</span> <span class="si" style="color: #d14;">)</span><span class="s2" style="color: #d14;">"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

9

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"></span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Get paths to other necessary files.</span></span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

11

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="nv" style="color: #008080;">hist</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$script_dir</span><span class="s2" style="color: #d14;">"</span>/histogram.py</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

12

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nv" style="color: #008080;">filtlong</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$script_dir</span><span class="s2" style="color: #d14;">"</span>/../bin/filtlong</span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

13

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

14

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Prepare a tab-delimited file of read info.</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

15

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-n</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$illumina_1</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-n</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$illumina_2</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

16

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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="k" style="font-weight: 600;">    </span><span class="nv" style="color: #008080;">illumina_args</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-1 "</span><span class="nv" style="color: #008080;">$illumina_1</span><span class="s2" style="color: #d14;">" -2 "</span><span class="nv" style="color: #008080;">$illumina_2</span></span>

</pre>

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</td>

<td class="new_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

17

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

18

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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"><span class="k" style="font-weight: 600;">    </span><span class="nv" style="color: #008080;">illumina_args</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

19

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

20

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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="nv" style="color: #008080;">$filtlong</span> <span class="nv" style="color: #008080;">$illumina_args</span> <span class="nt" style="color: #000080;">--min_mean_q</span> 1 <span class="nt" style="color: #000080;">--verbose</span> <span class="nv" style="color: #008080;">$long_reads</span> 2>&1 <span class="o" style="font-weight: 600;">></span>/dev/null | <span class="nb" style="color: #0086b3;">grep</span> <span class="nt" style="color: #000080;">-P</span> <span class="s2" style="color: #d14;">"length = </span><span class="se" style="color: #d14;">\d</span><span class="s2" style="color: #d14;">+"</span>  | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/\s\+length = //'</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/\s\+\w\+ quality = /\t/g'</span> <span class="o" style="font-weight: 600;">></span> temp_filtlong_read_info</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

21

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"></span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

22

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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"><span class="nb" style="color: #0086b3;">printf</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s2" style="color: #d14;">"</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

23

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"READ SET SUMMARY"</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

24

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"----------------"</span></span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

25

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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"><span class="nb" style="color: #0086b3;">printf</span> <span class="s2" style="color: #d14;">"number of reads: %'d</span><span class="se" style="color: #d14;">\n</span><span class="s2" style="color: #d14;">"</span> <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">cat </span>temp_filtlong_read_info | <span class="nb" style="color: #0086b3;">wc</span> <span class="nt" style="color: #000080;">-l</span><span class="si" style="color: #d14;">)</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

26

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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"><span class="nv" style="color: #008080;">total_bases</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">cut</span> <span class="nt" style="color: #000080;">-f1</span> temp_filtlong_read_info | <span class="nb" style="color: #0086b3;">paste</span> <span class="nt" style="color: #000080;">-sd</span>+ - | bc<span class="si" style="color: #d14;">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

27

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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell"><span class="nb" style="color: #0086b3;">printf</span> <span class="s2" style="color: #d14;">"number of bases: %'d</span><span class="se" style="color: #d14;">\n</span><span class="s2" style="color: #d14;">"</span> <span class="nv" style="color: #008080;">$total_bases</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell"><span class="nv" style="color: #008080;">target</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">$((</span><span class="nv" style="color: #008080;">$total_bases</span> <span class="o" style="font-weight: 600;">/</span> <span class="m" style="color: #099;">2</span><span class="k" style="font-weight: 600;">))</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

29

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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"><span class="nv" style="color: #008080;">n50</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span>zless <span class="nv" style="color: #008080;">$long_reads</span> | <span class="nb" style="color: #0086b3;">paste</span> - - - - | <span class="nb" style="color: #0086b3;">cut</span> <span class="nt" style="color: #000080;">-f2</span> | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'{print length($0);}'</span> | <span class="nb" style="color: #0086b3;">sort</span> <span class="nt" style="color: #000080;">-nr</span> | <span class="nb" style="color: #0086b3;">awk</span> <span class="nt" style="color: #000080;">-v</span> <span class="nb" style="color: #0086b3;">tar</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$target</span><span class="s2" style="color: #d14;">"</span> <span class="s1" style="color: #d14;">'{sum += $0; if (sum > tar) {print($0); exit;}}'</span><span class="si" style="color: #d14;">)</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

30

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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="nb" style="color: #0086b3;">printf</span> <span class="s2" style="color: #d14;">"N50 read length: %'d</span><span class="se" style="color: #d14;">\n</span><span class="s2" style="color: #d14;">"</span> <span class="nv" style="color: #008080;">$n50</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

31

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell"></span>

</pre>

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32

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell"><span class="nb" style="color: #0086b3;">printf</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n\n</span><span class="s2" style="color: #d14;">"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

33

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<pre style="margin: 0;">+<span id="LC33" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"READ LENGTHS"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

34

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<pre style="margin: 0;">+<span id="LC34" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"------------"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC35" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat </span>temp_filtlong_read_info | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'{print $1, $1}'</span> | <span class="nv" style="color: #008080;">$hist</span> <span class="nt" style="color: #000080;">-a</span> <span class="nt" style="color: #000080;">-m</span> 0 <span class="nt" style="color: #000080;">-b</span> 40</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

36

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<pre style="margin: 0;">+<span id="LC36" class="line" lang="shell"></span>

</pre>

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37

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<pre style="margin: 0;">+<span id="LC37" class="line" lang="shell"><span class="nb" style="color: #0086b3;">printf</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n\n</span><span class="s2" style="color: #d14;">"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

38

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<pre style="margin: 0;">+<span id="LC38" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"MEAN QUALITIES"</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC39" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"--------------"</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC40" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat </span>temp_filtlong_read_info | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'{print $1, $2}'</span> | <span class="nv" style="color: #008080;">$hist</span> <span class="nt" style="color: #000080;">-a</span> <span class="nt" style="color: #000080;">-b</span> 40</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

41

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<pre style="margin: 0;">+<span id="LC41" class="line" lang="shell"></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC42" class="line" lang="shell"><span class="nb" style="color: #0086b3;">printf</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n\n</span><span class="s2" style="color: #d14;">"</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC43" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"WINDOW QUALITIES"</span></span>

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<td class="new_line diff-line-num new" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

44

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<pre style="margin: 0;">+<span id="LC44" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"----------------"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

45

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<pre style="margin: 0;">+<span id="LC45" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat </span>temp_filtlong_read_info | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'{print $1, $3}'</span> | <span class="nv" style="color: #008080;">$hist</span> <span class="nt" style="color: #000080;">-a</span> <span class="nt" style="color: #000080;">-b</span> 40</span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

46

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<pre style="margin: 0;">+<span id="LC46" class="line" lang="shell"></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

47

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<pre style="margin: 0;">+<span id="LC47" class="line" lang="shell"><span class="nb" style="color: #0086b3;">printf</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s2" style="color: #d14;">"</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC48" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm </span>temp_filtlong_read_info</span></pre>

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<br>

</li>

<li id="73c762a7efe6bf6111f932ffc25fd22717017144">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#73c762a7efe6bf6111f932ffc25fd22717017144"><strong>src/arguments.cpp</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,6 +88,9 @@ Arguments::Arguments(int argc, char **argv) {</td>

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<td class="old_line diff-line-num" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC88" class="line" lang="cpp">    <span class="n" style="color: #333;">i_arg</span> <span class="n" style="color: #333;">min_length_arg</span><span class="p">(</span><span class="n" style="color: #333;">thresholds_group</span><span class="p">,</span> <span class="s" style="color: #d14;">"int"</span><span class="p">,</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

89

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<td class="new_line diff-line-num" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

89

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<pre style="margin: 0;"> <span id="LC89" class="line" lang="cpp">                         <span class="s" style="color: #d14;">"minimum length threshold"</span><span class="p">,</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC90" class="line" lang="cpp">                         <span class="p">{</span><span class="s" style="color: #d14;">"min_length"</span><span class="p">});</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cpp">    <span class="n" style="color: #333;">i_arg</span> <span class="n" style="color: #333;">max_length_arg</span><span class="p">(</span><span class="n" style="color: #333;">thresholds_group</span><span class="p">,</span> <span class="s" style="color: #d14;">"int"</span><span class="p">,</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cpp">                         <span class="s" style="color: #d14;">"maximum length threshold"</span><span class="p">,</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cpp">                         <span class="p">{</span><span class="s" style="color: #d14;">"max_length"</span><span class="p">});</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC94" class="line" lang="cpp">    <span class="n" style="color: #333;">d_arg</span> <span class="n" style="color: #333;">min_mean_q_arg</span><span class="p">(</span><span class="n" style="color: #333;">thresholds_group</span><span class="p">,</span> <span class="s" style="color: #d14;">"float"</span><span class="p">,</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

95

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<pre style="margin: 0;"> <span id="LC95" class="line" lang="cpp">                         <span class="s" style="color: #d14;">"minimum mean quality threshold"</span><span class="p">,</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC96" class="line" lang="cpp">                         <span class="p">{</span><span class="s" style="color: #d14;">"min_mean_q"</span><span class="p">});</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -198,6 +201,9 @@ Arguments::Arguments(int argc, char **argv) {</td>

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<td class="old_line diff-line-num" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC201" class="line" lang="cpp">    <span class="n" style="color: #333;">min_length_set</span> <span class="o" style="font-weight: 600;">=</span> <span class="kt" style="color: #458; font-weight: 600;">bool</span><span class="p">(</span><span class="n" style="color: #333;">min_length_arg</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

199

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<td class="new_line diff-line-num" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC202" class="line" lang="cpp">    <span class="n" style="color: #333;">min_length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">min_length_arg</span><span class="p">);</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC203" class="line" lang="cpp"></span>

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<pre style="margin: 0;">+<span id="LC204" class="line" lang="cpp">    <span class="n" style="color: #333;">max_length_set</span> <span class="o" style="font-weight: 600;">=</span> <span class="kt" style="color: #458; font-weight: 600;">bool</span><span class="p">(</span><span class="n" style="color: #333;">max_length_arg</span><span class="p">);</span></span>

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<pre style="margin: 0;">+<span id="LC205" class="line" lang="cpp">    <span class="n" style="color: #333;">max_length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">max_length_arg</span><span class="p">);</span></span>

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<pre style="margin: 0;">+<span id="LC206" class="line" lang="cpp"></span>

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<pre style="margin: 0;"> <span id="LC207" class="line" lang="cpp">    <span class="n" style="color: #333;">min_mean_q_set</span> <span class="o" style="font-weight: 600;">=</span> <span class="kt" style="color: #458; font-weight: 600;">bool</span><span class="p">(</span><span class="n" style="color: #333;">min_mean_q_arg</span><span class="p">);</span></span>

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<pre style="margin: 0;"> <span id="LC208" class="line" lang="cpp">    <span class="n" style="color: #333;">min_mean_q</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">min_mean_q_arg</span><span class="p">);</span></span>

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<pre style="margin: 0;"> <span id="LC209" class="line" lang="cpp"></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -245,9 +251,9 @@ Arguments::Arguments(int argc, char **argv) {</td>

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<pre style="margin: 0;"> <span id="LC251" class="line" lang="cpp"></span>

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<pre style="margin: 0;"> <span id="LC252" class="line" lang="cpp">    <span class="c1" style="color: #998; font-style: italic;">// If nothing is set, then Filtlong won't do anything. Give an error message and quit.</span></span>

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<pre style="margin: 0;"> <span id="LC253" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">trim</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">split_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">target_bases_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">keep_percent_set</span> <span class="o" style="font-weight: 600;">&&</span></span>

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<td class="new_line diff-line-num old" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC248" class="line" lang="cpp">            <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">min_length_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">min_mean_q_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">min_window_q_set</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;">+<span id="LC254" class="line" lang="cpp">            <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">min_length_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;"><span class="idiff left">!</span></span><span class="n" style="color: #333;"><span class="idiff">max_length_set</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff right"> </span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">min_mean_q_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">min_window_q_set</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;"> <span id="LC255" class="line" lang="cpp">        <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Error: no thresholds set, you must use one of the following options:</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<pre style="margin: 0;">-<span id="LC250" class="line" lang="cpp">        <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"target_bases, keep_percent, min_length, min_mean_q, min_window_q, trim, split</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<td class="new_line diff-line-num new" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC256" class="line" lang="cpp">        <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"target_bases, keep_percent, min_length, <span class="idiff left right">max_length, </span>min_mean_q, min_window_q, trim, split</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC257" class="line" lang="cpp">        <span class="n" style="color: #333;">parsing_result</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">BAD</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC258" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">return</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC259" class="line" lang="cpp">    <span class="p">}</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -265,6 +271,13 @@ Arguments::Arguments(int argc, char **argv) {</td>

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<pre style="margin: 0;"> <span id="LC271" class="line" lang="cpp">        <span class="n" style="color: #333;">parsing_result</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">BAD</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC272" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">return</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC273" class="line" lang="cpp">    <span class="p">}</span></span>

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<pre style="margin: 0;">+<span id="LC274" class="line" lang="cpp"> </span>

</pre>

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<pre style="margin: 0;">+<span id="LC275" class="line" lang="cpp">    <span class="c1" style="color: #998; font-style: italic;">// Non-positive max_length doesn't make sense.</span></span>

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<pre style="margin: 0;">+<span id="LC276" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">max_length_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">max_length</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC277" class="line" lang="cpp">        <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Error: the value for --max_length must be a positive integer</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

</pre>

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<td class="new_line diff-line-num new" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC278" class="line" lang="cpp">        <span class="n" style="color: #333;">parsing_result</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">BAD</span><span class="p">;</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC279" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">return</span><span class="p">;</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC280" class="line" lang="cpp">    <span class="p">}</span></span>

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<pre style="margin: 0;"> <span id="LC281" class="line" lang="cpp"></span>

</pre>

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<pre style="margin: 0;"> <span id="LC282" class="line" lang="cpp">    <span class="c1" style="color: #998; font-style: italic;">// keep_percent must be between 0 and 100 (exclusive).</span></span>

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<pre style="margin: 0;"> <span id="LC283" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">keep_percent_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="p">(</span><span class="n" style="color: #333;">keep_percent</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mf" style="color: #099;">0.0</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">keep_percent</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mf" style="color: #099;">100.0</span><span class="p">))</span> <span class="p">{</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -311,4 +324,4 @@ Arguments::Arguments(int argc, char **argv) {</td>

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<pre style="margin: 0;"> <span id="LC324" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">Arguments</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">does_file_exist</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">filename</span><span class="p">){</span></span>

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<pre style="margin: 0;"> <span id="LC325" class="line" lang="cpp">    <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ifstream</span> <span class="n" style="color: #333;">infile</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">);</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC326" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">infile</span><span class="p">.</span><span class="n" style="color: #333;">good</span><span class="p">();</span></span>

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<pre style="margin: 0;">-<span id="LC314" class="line" lang="cpp"><span class="p">}</span></span></pre>

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<pre style="margin: 0;">+<span id="LC327" class="line" lang="cpp"><span class="p">}</span></span></pre>

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<li id="bcdb375d30dc5d528a02896b66856d5cbcd4d898">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#bcdb375d30dc5d528a02896b66856d5cbcd4d898"><strong>src/arguments.h</strong></a>

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<pre style="margin: 0;"> <span id="LC42" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">min_length_set</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC43" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">min_length</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC44" class="line" lang="cpp"></span>

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<pre style="margin: 0;">+<span id="LC45" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">max_length_set</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC46" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">max_length</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC47" class="line" lang="cpp"></span>

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<pre style="margin: 0;"> <span id="LC48" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">min_mean_q_set</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC49" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">min_mean_q</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC50" class="line" lang="cpp"></span>

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<li id="b958235ee8db37bcaceda04b6d55553b450c2db4">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#b958235ee8db37bcaceda04b6d55553b450c2db4"><strong>src/main.cpp</strong></a>

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<pre style="margin: 0;"> <span id="LC29" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include "kmers.h"</span></span>

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<pre style="margin: 0;"> <span id="LC30" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include "misc.h"</span></span>

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<pre style="margin: 0;"> <span id="LC31" class="line" lang="cpp"></span>

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<pre style="margin: 0;">-<span id="LC32" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define PROGRAM_VERSION "0.2.<span class="idiff left right">0</span>"</span></span>

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define PROGRAM_VERSION "0.2.<span class="idiff left right">1</span>"</span></span>

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<pre style="margin: 0;"> <span id="LC33" class="line" lang="cpp"></span>

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<pre style="margin: 0;"> <span id="LC34" class="line" lang="cpp"><span class="n" style="color: #333;">KSEQ_INIT</span><span class="p">(</span><span class="n" style="color: #333;">gzFile</span><span class="p">,</span> <span class="n" style="color: #333;">gzread</span><span class="p">)</span></span>

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<pre style="margin: 0;"> <span id="LC35" class="line" lang="cpp"></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,9 +94,14 @@ int main(int argc, char **argv)</td>

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<pre style="margin: 0;"> <span id="LC94" class="line" lang="cpp"></span>

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<pre style="margin: 0;"> <span id="LC95" class="line" lang="cpp">            <span class="n" style="color: #333;">any_fasta</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">any_fasta</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">fasta_format</span><span class="p">);</span></span>

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<pre style="margin: 0;"> <span id="LC96" class="line" lang="cpp">            <span class="n" style="color: #333;">any_fastq</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">any_fastq</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">fastq_format</span><span class="p">);</span></span>

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<pre style="margin: 0;">+<span id="LC97" class="line" lang="cpp">            <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">any_fasta</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">any_fastq</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;">+<span id="LC98" class="line" lang="cpp">                <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n\n</span><span class="s" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Error: could not parse input reads"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cpp">                <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"  problem occurred at read "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">read_name</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cpp">                <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC101" class="line" lang="cpp">            <span class="p">}</span></span>

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<pre style="margin: 0;"> <span id="LC102" class="line" lang="cpp"></span>

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<pre style="margin: 0;"> <span id="LC103" class="line" lang="cpp">            <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">fasta_format</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">kmers</span><span class="p">.</span><span class="n" style="color: #333;">empty</span><span class="p">())</span> <span class="p">{</span></span>

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<td class="new_line diff-line-num old" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC99" class="line" lang="cpp">                <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Error: FASTA input not supported without an external reference"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<td class="new_line diff-line-num new" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC104" class="line" lang="cpp">                <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;"><span class="idiff left">"</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">"</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff"><<</span></span><span class="idiff right"> </span><span class="s" style="color: #d14;">"Error: FASTA input not supported without an external reference"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC105" class="line" lang="cpp">                <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC106" class="line" lang="cpp">            <span class="p">}</span></span>

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<pre style="margin: 0;"> <span id="LC107" class="line" lang="cpp"></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,10 +130,6 @@ int main(int argc, char **argv)</td>

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<pre style="margin: 0;"> <span id="LC130" class="line" lang="cpp">    <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC131" class="line" lang="cpp"></span>

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<td class="old_line diff-line-num" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC132" class="line" lang="cpp">    <span class="c1" style="color: #998; font-style: italic;">// Determine the output format.</span></span>

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<pre style="margin: 0;">-<span id="LC128" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">any_fasta</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">any_fastq</span><span class="p">)</span> <span class="p">{</span></span>

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<pre style="margin: 0;">-<span id="LC129" class="line" lang="cpp">        <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Error: could not determine input format"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>

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<pre style="margin: 0;">-<span id="LC130" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>

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<pre style="margin: 0;">-<span id="LC131" class="line" lang="cpp">    <span class="p">}</span></span>

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<pre style="margin: 0;"> <span id="LC133" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">fasta_output</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">any_fasta</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC134" class="line" lang="cpp">    <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">fastq_output</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">any_fastq</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC135" class="line" lang="cpp"></span>

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<br>

</li>

<li id="57c3c58e9b5fb7fc752c23a0041722bf1cf56a8c">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#57c3c58e9b5fb7fc752c23a0041722bf1cf56a8c"><strong>src/read.cpp</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,6 +65,8 @@ Read::Read(std::string name, char * seq, char * qscores, int length, Kmers * kme</td>

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<pre style="margin: 0;"> <span id="LC65" class="line" lang="cpp">    <span class="n" style="color: #333;">m_passed</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC66" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">min_length_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">m_length</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">min_length</span><span class="p">)</span></span>

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<pre style="margin: 0;"> <span id="LC67" class="line" lang="cpp">        <span class="n" style="color: #333;">m_passed</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">max_length_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">m_length</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">max_length</span><span class="p">)</span></span>

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<td class="new_line diff-line-num new" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp">        <span class="n" style="color: #333;">m_passed</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>

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<td class="old_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

68

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<td class="new_line diff-line-num" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

70

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<pre style="margin: 0;"> <span id="LC70" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">min_mean_q_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">m_mean_quality</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">min_mean_q</span><span class="p">)</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

69

</td>

<td class="new_line diff-line-num" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

71

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<pre style="margin: 0;"> <span id="LC71" class="line" lang="cpp">        <span class="n" style="color: #333;">m_passed</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

70

</td>

<td class="new_line diff-line-num" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

72

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<pre style="margin: 0;"> <span id="LC72" class="line" lang="cpp">    <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">min_window_q_set</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">m_window_quality</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">min_window_q</span><span class="p">)</span></span>

</pre>

</td>

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</table>

<br>

</li>

<li id="a865f66cabff6d6ef0cbc2d2c4e042d923779f00">

<a href="https://salsa.debian.org/med-team/filtlong/-/commit/0fcecb87a439d815c5f4682dc8964df695128f5c#a865f66cabff6d6ef0cbc2d2c4e042d923779f00"><strong>test_sort.fastq</strong>

deleted

</a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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<td class="old_line diff-line-num old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

1

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<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">@test_sort_1</span>

</pre>

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<td class="old_line diff-line-num old" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

2

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">AGCGGGACTCTTCCCGAGGGGCCTGGAAATACCACGGATTCCAATAGTACGTTCTGTTAGCTGGGTGTCTTTATGCATGCCAAGGTTCGAACCTCCGGCCATGTTGGATGTTGAAAAGGTAGCCAGCGAGATGGAAGAAGGCCAAGGCTTCATATTACCCCGAATTCTCAAGGTGGATAAGGGGAACTAACGGCTGCGAGCATGCAGCTGGCATCAATGGCCAGGCGACAGATTTACTCTACTTTCCGCTGCTTGTTCTGGATTGGGATGTTAACCCTTTGATCCCACAGAGGTCAGCGGAGAAAACAACGTCTAAATATAGTCGGACAGACTGTAGCGACCCGGTTAGCACTCCCTAATTTTATCTAACTAGGCGGACACACTCTTACCACAGGGGCTCCAAGGTTCTCTCATTTCCGTGGGTGTAGCAACGTCCTATTCTTATGCGGACGCGAAGTAACGAGTATTCTCTTGGATTTTAACTGAGCTATCACTCCGCGTGAAGGATAACCGGCTTGACTAAAGGAGACGGTCAGTCGCAGAGGGCAACGCGCTATATACATTCGGTTTATTGAGTTCACCCTGGATAGTGACGCGGCCCTGGTTGTAGGTCGGGGCAAACTCTGAAATTGCTACTCGTATACAGGGTTGTGCGCTCGTAAGGACTCCCCCCTGGCGTCGAAGCTAGTTCGACAAAATGGCCCCGGAAGACGTTATCTAGATGAGTCTGGGTGGCTTTCAAGAATTCGCCTATCTTGGTACCTGGCCCTAACGATCAGACAGGCGCACTGCTGATGAGGGCATGTACCGACCATACGGTTTTTCTTCAGGCAAATGCCCGTTCCGGTGTCCGTGGTCAAGACTCAAAATCTCCCCTAAGGCTGTCACGAATTAGAGTTTCGTGTGAGAGATTAGTGTTAGCCCTCAGTGGGTCCTAATAAGAACCCACTAAGTTAGCCTCGCCGGTACGCAGACCTAGAGACTTGTTGGTGGGCAGCTTCTGCGCTGTTGGCATTCCTGCATAAAGAGAAACGTTATCGGCTGCCGGTGTCATCTGCCAGTGCTGCCGAGTCGAGCTTGTAGCACTCATTGAAGGTGCTGTGAGCTGCACGCCTCCACTAATTTAATCCCCGTCGCAAAGTTGGTCAGACCAGGAGCCTTCAGTGCACTGTGACAACTGGAATTCCGACTCCGGAAAAGTGCAATGGGTGTCCAGTGGACGACTTCTTGTGATTCGCGCCCGCGCCGCGTCCACAGGGGGACTCGGCGAAAAGTACAAAAGTAGGGGGAGCGCCCTGAGGAGAGTGGATCGTGCCGTCACCGGGTGACGGGTACAAGAACCTACTACTAGTGACGATGCTCTTAGATGGAGTGTAGCACGATCTTCACGGATAAAATAATGAAACAAACTGGGGCCGTTGGGCCCCCGAAGTATATGAACTGCGGCCATGTATGTTATGAATCCCCTCGGGTTCGAGGCTGCTCAAAAGTCTGCGTAGGACTCTCATCGGGACCTATACTAGATGGCGATGCGGAATACAGCGGCCTAGCTTTTATGCGATGTGCGGGGATAATTCTAATAGTTGCGGCTGGTCCATAACCGTGGACGTCGTATATTGGCAGACCTGCACAGTTGGTCCGATTAGACATACAGCACCCTTCTACATCCTGTTGTTCTGGAGAAGCCCACTCTAGTAGGACGGTTTACCTATGGACATGCGGTGTCCTAAATCATCCTACCGGAATTCTCATGCACTTCTGCCGTTCCCCCGAACATTCTAGTGGTGGGCTCGGGCTGCTGATAATCCACTCCATTGGGTGATACAAGAGGCGAGTTTGCCTTAGTTTGGGCAGGTCATGAAACCAAGCAACCGCATGCTTAGCTGGCTAATTGTTCGACTCGGCCACCAGCAAACTGTCGAAACGCGTAGAAAGTACAATTCCGTAAGCGAGTTCGGAATCCAGACCCGCGGCAATGCCCTCTCTTCCTACGCAGCGACCCCCTGTTTACACAGACAAGGCCCCGATGGCCAATCGGGAGTCTCGACGAGTGCCATAGAGGCGCCCTACCGGCGTCAGTGGGGGTGATTAATCACTTCACTGGTTCGCGGTGGGCTACGCGCTCACCTAGCTTCCCCGTAGTGTATTGACGAGTGTGGGCCCAGGATATGGAAGTTAAGGCTGGAGGAATAGATAACCGTCGTACCTCCCCTGGACGAGATAGCACTAAATCCTGGAAATGAGACGGATCCGAGAGTTCTGATAATGTTCGAGATGGGACAACAGGCGAATCTCGCAAACGTGCTTCAAAATATAACGTAGCATCCCGCTTATGGGCTTTATCGCGAAACCTGACAGCGCTCCCTCAAACCCCTAGTTCGGAAAATCGTGTCGCTCCTACAGTCCATCACTCAACTTCAGTTGAGCAATAAGTTTAGGGCGCGTCACTCTATCTACTTTACTGCTGAATGGACCCTTGTGTGGATCGTAAACCTTCAAGTCCCTGGGACTGCCTGTTCTTGCGATGATAAGATTAAGTGTTTGCCCGTTTGCCAACCATCCCTCAAATCTCGTTGATGAACCTGCCCCTTCTGTTCCATTACCAATCGACGGCTCTAACTTTTCAATCTGTGGCATGGACCCCATAAAGAGGGACCAGCGTTCAGGGAGACTTCTACAAACTTACGTTACATTATACCGTTCGCGGTGAGCGTGCGGTCAAGCATTCCAAAAGTACTCCGCGAGCCGTACGATCGACCTCTAGTATACTCCTGGTGCGGAGCAAACGATTTGAGCAGGCCTCATATAGAATGTGCAATCGCTCATTGTCGCAAAGCCACAACCAGTCACGCCGTTCGTCGACTACCACCCACTTCGTGGATGTGCGCCAAGTCTGTCTCCAGCTCTCAAGACTCATTGCAACTTGCCAATAACCTCAGTGCCTTGTCACTTCGAGTTCTTGAGGAATAGTCAGGGTCCTTAAACTTCATCGACTCGGCACAGTCTCTAGCCTCATTACTTCCCATTCCGGCCCGATGTGGAAGCGGTCCGGCTACTCAAATGCTCCCGGAGACCGAAGATTTCGGGACCTTTCGTTGTCAGACGCCAGTCATTGTTGCCTCTAACTGCATTGGAATCTGGCCCAAATAGAGATTGACCTCGGGAATCCGTCGCTGGGCAGGGCGTCGTACTCTGAACGGGACATCACTCCCGACCACCGGGGGGCGTCGTAGGTGCAGCAGACTGACAAATCCGTCCCAGTCGACTTATGTTCGCATGTCGTTATTAACTGCCTTGTACCTACGGTATGTACTGAACCACCGAGATCAGGGCAGGTTGAGCAAATTCATATCTCAAGGTGTGTCGAGAAAAAACGATTTAAGCTCTAGACCGGGAGTGCTGGTCAGAGTGTTCTGCTCACAAGGAAGCAATTCGGTGTTGGGTACCAATCAGAAATCACACCGTGGCTCTGAGCTTAATCCCTTGGGTTGGGCAACCGGGAGGACCAAGAGTACCGGCGACGGCCTCTGATTCTTGACGGTATAGGAGACATGCCTATACACGTTCGAGAGTAGTGACAGCATAGGATGCCTCAACGCTTTTACTCACGAGTGTGTGGTCCAATCTTGATGTCTAGACATGAGTTTTTCTAACGAGTGAACGGTATCCTATCCGCCCTCTGGATCAGCGGTTTCGGGGGTCCCTATGATGCTGTTCATATGCTCTGTCCATTGATTTGAGCCTACGGTATGAAGCACTCGCGGTGAAAAGGTTGCTGTAACCCGCGGGTGGTTACGATCTAATCTTCTGGTACGAAGGCGTGCCGTTACGCCAAAACTGGTACCTTGGTGTTTTTGCTGATCTCCAGAATTTTTGCTGTACTATTCCAATTTAGGAGTCATGAGTCCGGAATGTCATTCCGACAAGCAGTATTCCCAACAGAGAACACTTGCATACTCGTTAATGATGAACACCTCTAATACGGAGACGCACCAGGTCTCCTAATCCCGGTTGTTTGCGACTCTGTTGTATATGATCAGAGAAAGGCGTATAAGAGCACCCCTATCTGTTGTCGTTTGGTCCGGACTCTTTAACTTCGGACCCAGACTCCCCCATGTCGCCATGCAACGCACCCATTTCAGGACTTTATCTGAAGCCTCTGCAAGTAGTACAGATCGCTTGCCCTCCTTGTTCGTTAGGTTAAAGTACATTTGACGATCACAGCCCCCATGTTCTTCTTAAGTCCTGGGCCTGCAAGACATGGTAACACTATAACCAATGCTACGTAATAAACGGATAAACAGAGCCATGACATTGGCACAGCGTGCCGTGATCCGCTTACCAAATGATAAACTTGGTGATAATAGCAGTTTATTTGTAAGCCGTCGCGTGACAGAGGTCTGTAACTCTGATGAATTCCGAGCGCGCGTCGTCTGAAGTTGGTTGGCTAGGATTCGTCCTTAATGCAGTCTAAGCTGCCAGTAGCCACGAGAGTTAATTCACAAAGGTGGTACGCTGCTTCACAGTTCCAGGATGTAGAGTCAGAACCACTATAAAATCAAGTGCTCTTATGATAGGGATTGCCAGGTCGTTTGGAACTCGCTCAGACAGTCGCCGTCATAGAAATACATTACCTAAGCCCACGTGATATTGAACAGACCCCGCTATGGGATATAGTATACGAACGTAATAGAAGAACCGGATAACCTTGGTAAATATCTTCCAGAACGGGTCCGGCCGTTTAGCGTGATTTCAGACCTTAGTGTCAACTTCTCTACTTGCTGGTGGATAAGTATTACCACTTTTATTCCAACCGGTAGACTACGCCATGAGTGTGCGAGGACGCAGTGGAGCCGGACGAAGGCATGTCGACAGATATCTATCACAAGCCAAATACGCGGACTTGCGGAGGCACCGATATTTGGTACTTTTCTTGGATTATAATCGTTTGGTAGGCCTTGTGGTAACCATGTGAGCGTCGTGGCGCTCGGAACTACTTT</span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

3

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">+</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

4

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">,,++,+**++**,*,,,+***,+*+*+*+,*,+**,*+++*,++*,+*,++*,+,+,+,*+++*,*+**,++*++****++,**,*+,*+++,*,,,***++,*,*++,+,**+,++++++**,++,,+*,+*+,*,***+*+++,,,**+**+++**+*,,*+,++**,,,,*+,,*+**+*,+,*+*,*+*+*+++,,,,,+*+,++,+**,*+,+,+**+,,++*++***,*,+,,,,+*+,*,*,**,++,+*,++*,,,*+++,+,*+,,*+*+*,,,,,+,+++,**,+*,+++++,,,,+,++++++,,,,*,,*,+*,*++*,+,+,++,,+*,*+*+,++*,+*,+*++,,++,,,*++**,,,,+**+*,++++++*,,*+,,,,,*,*+++**++,*,*,+++**,,*,*+,*++,,,*,+*,,,+*+*++*,***+,,,,++*+,**,*,,*,+*,,**,+,,,+*,***+,++,,,***,+++,++,+,**+**+++,,*++,**,*,+*,,+**,*,*+,,,++,*,**+,**,*++,*+***,,,,+*,+,+*,++,+*+,,+*+,+++*,,,*+*++,+,,*+++*,+*,,+,+,*,++*+,*,**,+**+*+++*+++,,,+*+,,++*,*+,**,,**+,++*,+*,**+,+,,,*++*++,*,,**+,+***,+++++,,,+,,**++*,,,,*,**+,,*,,*+*,*,**+,,,**,,+,,**++*+*,,**,*,,+,,+*++**+*+***+,*+,*+,***+,*,**,,,,+,*,++,+,+,++,*+**+**+*+,+***,++,+*++,,,,+*,,*+++*+*+*,**,,,+,+,++,**+,*,+,+*,**+,+++,*,+,,,**++,*,,++***,+,,,+*++,++,***+*++*,++*++,*,,+**,,++,,*+,+***+*,++,***+,,**,+*+,,+,+**++*,**,*+,,**,,+**+*,**,+,+*+,++***+**,,+**,,++++,,**,*+*,+,+,+++,,++,+***,*,,*,**++,,**,,+*,+,*,,,,,,*,**,+,+,++*,,,+,+,*,*,***+*+++*+,+,*++****++,,,++,++,+*****+*,,+++*+**,**,,,,*,**+++*+,+,*,+,*+*,+*,,,+,++,**,*,,+,*+*+,+,+,*,++*+++++,*+**+*++,+,,********+,++*,****,,++*,*++,*+,+*+,,*+++,**++*,,++*+**++**+,+**+*+++,++**,+,+++++*+*++*,**+,+,,+,,,+*+**,*+,+**+,+*+*++,+++,,,*,*+++*,,+,+++*+,,+,,+**,*,+,+,*+,++****,*,,*,,,+*++,+,,+,+**,**++++,,++,+,,*,*,,*,,,,*,*+,+*+*,***+***+++,+*+,,,+**,+,+,*,+,,*,,*,,,,****,,+*++****++,+**+*,*,,++*,,+***+*+++,**,*+*,+*****+*,**,*,**,,+,+++*,*+,+**+*,+*++,**++*,*,+,,++,****++**,*****+++,,,++*,+*+,*+***+*,**+**++,*++,+++++,****,+*+,,,*+**+++*+,*****++,,**,++*+,,+,+****++,+*+**+*+***+,,,+,**+*+*****,**,,,*+*,*,+*,*+++***,,+*++,,,+++*,*++,+,*+,,+,++**+,***+****,,+**,+*,,+*+*+*+,,*,+*++*,**+++++,+,,,+,+***,+*,**+,*,,,,,**,,++,+,+**,,+*****+++,++*,+,+,,+*+*,,+,*,+*+,*,,,+***+**,++++++++++**++**,++,+*+++*,+*++**,*,+,+++++,*+,+++++*+**,,,,*+*,++,*,+*,,*+*+,*,,,*+**++*+**++,*+*++,+,,,,+,++,*,+*,*,,+,,*,,*,+,,**++,,*++,*,,++*,*++,*++***++*+++,,**++*,+***+**+*,**++,*,++*++*+**,*+,+*,*+*,,**,,++,,,*+**+*,*+,,,+**,**+++*+++,,,*++,+,+,**+***,,+,,*,*,*+,+,,,***+,,++,,++++,++,+*,,+***+,,*+**,*+,,,*,,+,,**++++++++*,+,++,+*+,,+,**,+*+,*,+++,*,+*,**,+**+,*+,,,+,+,+,,,,++,,*,*,+*+*,*+++*,,+,,+*+***+,++,,+*++,+,,,+++,***,,*+**+,*+,+,,,*++,,,+++,+*+++++++,*,**+*++++****,*+*,**,+***+***,,*,+*,,+*,+,+,*+,**,*,+,,,*+*,,*****++,,*+++,,+,,+,,,+,***,+++**+*+++,+,,,,,**+,+,*,++,***+++*+*,+*,+*,*+,,++,+,*,,+*+*,,+***,+,,+,+*,*****++,+,+**,+,,*,,+**,+*,+*,*,+,,,*,+***,**+**+*,,++,***+,**,,,,++++,+,+*,**,,,++,*,*+,,+*,,,+++*,,,+*++*++*,*,,,,,,,**,+,,,+,+,*+,**++,*+,*,++*,,,**+++******,,**+**,,*++*,*,,+,,*,,,+,,**++,+*+*,+,*,,,,,***++*+***,,,*+,+**,**+*,**,,+++*,+*+,*,*+,+,**+*,,,*,*+*+*,,+,*****,*+**,,*+,,++**++,,*,,*+*,**,*+,,,+,*+*,*,*+,**,,,++*,+,+,,*,,***,*+***,++,***,*,,*+++,*++*,,,,,*++,**+,,+,*,*,***+**,*,+*,,+++*,*,*,*,,**+**,,,+****,,*,,+,,*,,*,*,,,*++*,,+,,+***,*,,+,++**,+*,++,+,,,,,*++,*,++*+******++++++,+**,+,++,*+,,,,+,++*+,***,,+,,*,*,**++*,,+***,+,,*,+*+,,*+**+,,,,+++**,*,,**++**+,,++*,*+++*,+**+*,**+,,+,,,,,+*+**+*++***,++++,***+,,*,,+,,++*,+*,,,**,,,++,*++,,+*+,**+**,**++*++,++*,+,+*+*+**,,,++,++,+,**++,*,*,,,**+*+**,+*+*+***,,+,+++++*+,++++++,,,,,*,*+,**+,+*,,++,++,+**,*+*+,,*,*,**,,,,*++*,+*,*+,*++,*+,*+***,*,*****++,,,*+*,*+**,,*+**++**,,*,,++,*+,+*+,,++++,*+***+++**,*,,*+,*,+*,+,**+++**,,**++++,,*++,+*+,++++,,,,,+,*,,+,*,,,*+*,,+,+*,+,+*+++,*,,+**,******,,,*,+,+**,,,*,,,,+*,+,*++++*++,+**+*,****,,,+**+,,+++*,*,*,,,+,++*,*+**+,,++++,*****,***+*++,+**+*,*****,***,+,+*++*+**++,,**+,+*+*,+,,,*+**++*+*,*,+,+,,++,*++**++,++,,,*+**,,+,,,*,*+*,*,*,,,*,+++++,+*,*,+,*,,,+++,*,,**++,++,**,+*+*+,,++**,*+*,+*+**,*+*,*,**,,*,,+***+,***,*++**+,,*,,,,,,*,*,**,+*+*,,++,+++,+,,++,+***,*+,+,++++****+*,,,,,*+++,+,*,+*+,*+,,+,++++,*,,***,,+*,**,****,,+*+*,+,,*,**,****++*,,*+*,+*+*+,+,,,*++**,,++*,++,++++*+*,,++**+,,,,,**+,,*,,*++**+**+,+,+*+++++***+**++*,,++,+,+*,++,,,+++,*+,*,*++*+,***,++,,,****++*,*+*+++,,+,+*+,*,,*,+++,,*,+**,,,,+++,,+,+,+****+**,,+,+**,*,,*+,*,,+,*,,,+,*,+*+**+++,++*,*,+,++*+++,*+,++**+*+***,+++++**,,***+,+,*++***++*++++,,*,,+++,+***,+,++*+,,,,+*++*+,++*+*,*+,++*,,**,++*+*,+**,,++,*,*,*+*+*+++,*+,,,,,,+,++*++*+*++,,,*+*+*,,**+,**,**,*,,,***,+,,**,*+,+,,+*+*+*,,+*,+,,*,*,,,+,,,*+*++**,+,,,++*+,,,,,*+,*+,*++,***+*+,++,+++*,,**+**,+,,**++**,++*+*++,**,,,*+*+++**+*,+,,,*,,,*,****+,*****,*,++,,***+,,*,*++*,,++,,*,**+,+,,+,++*,++*,++,+*+++,,,,,,*+,,,,,+,+,+*,,*,,+,*+,*++*,*,*++,**,+*+*+++*+,*,***,,+,*+*,*,,++,,++,**,++**,*,,+++,*+,+,,**,,,****++*,+**++,*,*+*+*,,,,*,+,++,,,*****++*+*,,*+**,,*,,+*++,*++**,++,,+,*,*,++,*+*+*,,**,,,+,,,+**,+,+,,++*+*,*,,,*,,,*,***,*+++***,+,+,**,+,+*+,+,*,**,,,,,,,++,*,+,,++,++*,*,+,+*+*,*,,,******,**+,+,*++*+++,,,,*,*,++,***+,+,*,+++++,,,+++**++,***+,*****,***+*,*+*++,**,,,,,*+*,+,,*+***,**,+,*,,,,,**,,+*,**,,*+,***,**++++,*+++**+***,,+*,+*,++*++++,+*,+,**,+**,,**+,+++++*+**,+*,++,**+*+++,**,,+,*,+*,+,++,,,*</span>

</pre>

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</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

5

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">@test_sort_2</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

6

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">AGCGGGACTCTTCCCGATCGGCCTGGAAAAACCACGGATTCCAATAGTACGTTCTGTTAGCTGGGTGTCTTTATGCATGCCAAGGTTCGAACCTCCGGCCATGTTGGATGTAGAAAAGGTAGCCAGCGAGAAGGAAGAAGGCCAAGGCTTCATATTACCCCGAATTCTCAAGGTGGATAAGGGGAACTAACGGTTGCGAGCATGAAGCTGGCTTCAATGGCCAGGCGACAGATTTACTCCACTTTCCGCTGCTTGTTCTGGATTGGGATGTTAACCCTTTGATCCCACAGAGGTCAGCGGAGAAAACAACGTCTAAATATAGTCGGACAGACTGTAGCGACCGGGTTAGCACTCCCTAATTTTATCCAAGTAGGCGGACACACCCTTACCACAGGGGCTCCAATGTTCGCTCATTTCCGTGGGTGTAGCAACGTCCTATTCTTCTGCTGACGCGAAGTAACGAGTATTCTCTTGGATTTTAACTGAGCTGTCACTCCGCGTGAAGGATAACCGGCTTGAGTAAAGGAGACGGTCAGTCGCAGAGGGCAACGCGCTATATACATTCGGTTTATTGAGTTCACCCTGGATAGTGACGCGGCCCTGATTGTAGGTCGGGGCAAACTCTGAAATTGCTACTCGTATACAGGGTTGTGCGCTCGTAAGGACTCCCCCCTGGCGTCGAAGCCAGTTCGACAAAATGGCCCCGGAAGACGTTATCTAGATGAGTCTGGGTGGCTTTCAAGAATTCGCCTATCTTGGGACCTGGCCCTAACGATCAGACAGGCGCACTGCTGATGAGGGCATGTACCGACCATACGGTTTTTCTTCAGGCAAATGCCCGTTCCGGTGTCCGTGGTCAAGACTCAAAATCTCCCCTAAGGCTGTCACGAATTAGAGTCTCGTGTGAGAGATTAATGTTAGCCCTCAGTGGGTCCCAATAAGAACCCACTAAGTAAGCCTCGCCGGTACGCAGACCTAGAGACTTGTTGGTGGGCAGCTTCTGCGCTGTTGGCATTCCGGCATAAGGAGAAACGTTATCGGCTGTCGGTGTCATCTGCCAGTGCTGGCGAGTCGAGCTTGTAGCACTCATTGAAGGTGGTGTGAGCTGCACGCCTCCACTAATTTAATCCCCGTCGCAAAGTTGGTCAGACCAGGCGCCTTCAGTGCACTGTGACAGCTGGAATTCCGACTCCGGAAAAGTGCAATGGGTGTCCAGTGGACGACTTCTTGTGACGCGCTCCCGCGCCGCGTCCACAGGGGGACTCGGCGAAAAGTACAAAAGTAGGGGGAGTGCCCTGAGGAGAGTGGAGCGTGCCGTCACCGGGTGACGGGTACAAGAACCTACTACTAGTGACGATGCTCTTAGATGGAGTGTAGCACGATCTTCACGGATAAAATAATGAAACTAACTGGGGCCGTTGGGCTCCCGAAGTATATGAACTGCGGCCATGTATGTTATGAATCCCCTCGGGTTCCAGGCTGCTCAAAAGTCTGCGTAGGAGTCTCATCGGGACCTATACTAGCTGGCGATGCGGAATACAGCGGCCTAGCTTTTATGCGATGTGCGGGGATAATTCTAATAGTTGCGGCTGGTCCATAACCGTGGACGTCGTATATTGGCAGACCTGCACAGTTGGTCCGATTAGACATACAGCACCCTTCTACATCCTGTTGTTCTGGAGAAGCCCACTCTAGTAGGACGATTTACCTATGGACATGCGGTGTCCTAATTCATCCTACCGGAATTCTCATGCACTTCTGCCTTTCCCCCGAACATTCTAGTGGTGGGCTCGAGCTGCTGATAATCCACTCCATTGGGTGATACGAGAGGCGAGTTTGCCTTAGTTTGCGCAGGTCATGAAACCAAGCAACCGCATGCTTAGCTGGCTAATTGTTCGACTCGGCCACCCGCAAACTGTCGAAACGCGTAGAAAGTACAATTCCGTAAGCGAGTTCGGAATCCAGACCCGCGGCAATGCCCTCTCTTCCTACGCAGCGACCCCCTGTTTACACAGACAAGGCCCCGATGGCCAATCGGGAGTCTCGACGAGTGCCATAGAGGCGCCCTACCGGCGTCAGTGGGGGTGATTAATCACTTCACTGGTTCACGGTGGGCTACGCGCTCACCTAGCTTCCCCGTAGTGTCTTGACGAGTGTGGGCCCAGAAGATGGAAGTTAAGGCTGGAGGAATAGATAACCATCGTACCTCCACTGGACGAGATAGCACTAAATCCTGGAAACGAGACGGATCCGAGAGTTCAGATAATGATCGAGATGGGACAACAGGCGAATCTCGCAAACGTGCTTCAAATTATAACGTCGCATACCGATTATGGGCTTTATCGCGAAACCTGACAGCGCTCCCTCAAATCCCTAGTTCGGAAAATCGTGTCGCCCCTACAGTCCATCACTCAACTTCACTTGAGCAATAAGTTTAGGGCGCGTCACTCTATCTACTTTACTGCTGAATGGACCCTTGTGTGGATCGTAAACCTACAAGTCCCTGGCACTGCCTGTTCTTGCGATGATAAGATTAAGTGTTTGCCCGTTTGCCAACTATCCCTCAAATCTCGTTGATGAACCTGCCCCTTCTGTTCCATTACGAATCGACCGCTCTAACTTTTGAATCTGTGGCATGGACCCCATCAAGAGGGACCAGCGTTCAGCGAGACTTCTACAAACTTACGTTACATTATGCCGTTCGCGGTGAGCGTGCGGTCAAGCATTCCAAAAGTACTCCGCGAGCCGTACAATCGACCTCTAGTATACTCCTGGTGCGGAGCAAACGATTTGAGCAGACCTCATATAGAATGTGCAATCGCTCTTTGTCGCAAAGCCACAACCAGTCACGCCGTTCGTCGACTACCACCCACTTCGTGGATGTGCGCCAAGTCTGTCTCCAGCTCTCAAGACTCATTTCAACTTGCCAATAACCTCAGTGCCTTGTCACTTCGAGTTCTTGAGGAATAGTCAGGGTCCTTAAACTTCATCGACTCGGCACAGTCTGTAGCCTCATGACTGCCCATTCCGGCCCGATGTGGAAGCGGTCCGGCTACTCAAATGCTCCCGGAGACCGAAGATTTCGGGACCTTTCGTTGTCAGACGCCAGTCATTGTTGCCTCTAACTGCATTGGAATCTGGCCCAAATAGAGATTGACCTCGGGAATCCGTCGCTGGTCAGGGCGTCGTACTCTGAACGGGACATCACTCCCGACCACCGGGGGGCGTCGTAGGTGCAGCAGACTGACAAATCCGTCCCAGTCGACTTATGTTCGCATGTCGTTATTAACTGCCTTGTACCTACGGTATGTATTGAACCACTGAGATCAGGGCAGGTTGAGCAAATTCATATCTCAAGGTGTGTCGAGAAAAAACCATTGAAGCTCTAGACCGGGAGTGCTGGTCAGAGTGCTCTGCTCACAAGGAAGCAATTCGGTGTTGGGTACCAATCAGAAATCACACCGTGGCTCTGAGCTTAATCCCTTGGGTTGGGCAACCGGGAGGACCAAGAGTACCGGCGACGGCCTCTGATTCTTGATGGTATAGGAGACATGCCTATACACGTTCGAGTGTAGTGACAGCATAGGATGCCTCAACGCTTTTACTCACGAGTGTGTGGTCCAATCTTGATGTCTAGACATGAGTTTTTCTAACGAGTGAACGGTATCCTATCCGCCCTCTGGATCAGCGGTTTCGGGGGTCCCTATGATGCTGTTCATATGCTCTGTCCATTGATTTGAGCCTACGGTATGAAGCACTCGCGGCGAAAAGGTTGCTGTAACCCGCGGGTGGTTACGATCTAATCTTCTGGTACGAAGGCGTGCCGTTACTCCAAAACTGGTACCTTGGTGTTTTTGCTGATCTCCAGAATTTTTGCTGTACTATTCCAAATTAGGAGTCATGAGTCCGGATTGTCATTCCGACAAGCAGTATTCCCAACAGAGAACACTTGCATACGCGTCAATGATGAACACCTCTAATACGGAGACGCACCAGGTCTCCTAATCCCGGCTGTTTGCGACTCTGTTGTATATGATCAGAGAAAGGCGTATAAAAGCACCCCTATGTGTTGTCGTTTGGGCCGGACTCTTTAACTTCGGACCCAGACTCCCCCATGTCGCCATGCAACGCACCCATTTCAGGACTTTATGTGAAGCCTCTGCAAGTAGTACAGATCGCTTGCCCTCATTGTTCGTTAGGTTAAAGTACATTTGACGATCACAGCCCCCATGTTCTTCTTAAGTCCTGGGCCTGCAAGACATGGTAACACTATAACCAATGCTACGTAATAAAAGGATAAACAGAGCCATGACATTGGCACAGCGTGCCGTGATCCGCTTACCAGATGATAAACTTGGTGATAATAGCAGTTTATTTGTAAGCCGTCGCGTGACAGAGTTCTGTAACTCTGATGAATTCCGAGCGCGCGTCGTCTGAAGTTGGTTGGCTAGTATTCGTTCTTAATGCAGTCTAAGCTGCCAGTAGCCACGAGAGTTAATTCACAAAGGTGGTACGCTGCTTCACAGTTCCAGGATGTAGAGTCTGAGCCACTATAAAATCAAGTGCTCTTATGATAGGGATTGCCAGGACGTTTGGAACTGGCTCAGACATTCGCCGTCATAGAAATACATTACCTAAGCCCACGTGATATTGAACAGACCCCGCTATGGGATATAGTATACGAACGTAATAGAAGAACCGTATAACCTTGGTAAATATCTTCCAGAACGGGTCCGGCCGTTTAGCGTGATTTCAGACCTAAGTGTCAACTTCTCTACTTGCTGGTGGATAAGTATTACCACTTCTATTCCAACCGGTAGACTACGCCATGAGTGTGCGAGGACGCAATGGAGCCGGACGAAGGCATGGCGACAGATATCTATCACAAGCCAAATACGCGGACTTGCGGACGCACCGATATTTGGTACTTTTCTTGGATTATTAGCGTTTGGTAGGCCTTGTGGTAACCATGTGAGCGTCGTGGCGCTCGGAACTACTTT</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

7

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">+</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

8

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">64466465654456545455456445454545456444644455645446566655656445666645546565456466454564454554456544555654546566544555564665546446545454546465566664456564445644644666666654454466464546466646445556655564465455664666566656555646446456466655656565646645645555455565656656454646464464554546455464466445544456454445554566445564656546566554555456446445464655655464545655664545654464445464554564556455666656444456456654445544566564646564464564544456465445564446455656645646566554544645646566466644444564464555566544464444664544556444655444646546456645546645464645444456656564645654465656556666465556564664455446646545666666564545454665465454454566564565645666554554655655664554566446546646556655555565654465545464444646654446564555554564556566465546566564554554545455644566544545666645566556444654645455464555646464556645546665555566556544555444554666544664665544464664444444544566466644466564645445545544446546465455466566656455446544564456565445564566646566645466445656454465664556565566665666565446456566455664646455646545564446554646545665655545464665455565664646556654645644456546564654554644554545456565664466566664644565466454455455645545655644565666464554444646546464646454446445544544446466445555444455544555654646455664665544655654556666444446555454654665455645655645554445446645454465455466546566666554464454665456456445556466656465564566666666454666555666644545445544456656555465664456454666644454465464654654566545555445565455464544644646445665666456656544664556454655566465446464454464654454665456565566546545546666554445444454564555564665555444556444545654646656566455545554664455546656546666444455664455664444565646656466664555546456565455564466645566454556455665556665656444466665564656444444445654465645664644464565446446656455644555664444654466565465455554665464644444564664565564445444554645656565446546544554554556654665566446644554546646666445654455464556646555655646664456656646556654455455665545545655466555455446565546454564565654655556555446646465455664565556565554445444464454665556664445646456464456565664465456656465666454455446445455455445454665545665446664456646666664544556555655656554444555656654665544446555455464645564455554644556444545555666645446454646455555654465654454444566464645446454654545546565465555444465555656556555566565445545464564556464564646556466464665454556555466566545454654554566456454455544566446454455645646554454446646644445455446665466464544655445646645456446445556455565655465545454566566466465454654564444666455456545555454654446545654654555466644444644665565664465466656556654455655565544644444566446444546646665464546654546566655646546654644546545466656554666464666465656465644545456456644655545664554645656445656666545545554566666656664544544654554644646664445646445466646554444565654566446646664454544664566666555646656555556445446646556566446555545545646646664544545466556645554445565564664546656465545454545564654665454446566556465644564644564655545565465455664545655544464564445554456444545654666446545566454546556464444444466545555564446555655655564445665556644564465564464444546655544546565456545555555566645544656444564655546445465555645456546654654645464466565644454554666465546544464565644656666545564664554654545554545544656656555654544644464444466646455655444564454556556556665655465565544566545665464644465656554556565544444456656656665566655656445456544546644656545566465545644465545445565445554546464555665666544565466665665655456544464444454654444656654465664666556544664665566565565666456465554455455544445646655456455456566446544445466445455656655566664465646666444446654664464454554646565544644665556454656455465644564465455455444545566446665565644466546445665444454666544645554646664666554554446545644665665645544445646444654666645456445545456446656566446456645566665666454656564554555545466654565464554665556554566456445566555555665656665454565664664556556544554545646656554545445645655545554654644444556566555666664454546545644644454446546446546645544456464655444544566644654546645566444466666654654554464555444564446544654655465545464645566555564466444654465646466455646444555566566544644545466465446464664666646644545664545455444645656666656655565446644446445555445456544446656644465564654654466644655466556445656654565656655446665445654656446466556546554445566446446566555465454446446646556545656546464664466445564446455565566564456544564465646565456545464566666654465544666446546466456444454566666665465556664564544664544465465645646454655646454455664655466456645646464464444544445545655655665546466564564644565555564665655664466556566555566656566545445555564444665444455456545646655546654564446645545445445665664444664666565464646665546446656555644456555645666445646456455466555546545656654566644566556666544666564464665454554664565456664656564656545445465465645454665666654556454566655556446464556564544446546644644465655545645565456445456656666565655554466555654544655644544444545466556644664566445464655554446566666464444656444666546665555466564555554446565646455544544555666545556445554565655566446456665645464454656</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

9

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">@test_sort_3</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

10

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">AGCGGGACTCTTCCCGAGGGGCCTGGAAATACCACGGATTCCAATAGTACGTTCTGTTAGCTGGGTGTCTTTATGCATGCCAAGGTTCGAACCTCCGGCCATGTTGGATGTTGAAAAGGTAGCCAGCGAGATGGAAGAAGGCCAAGGCTTCATATTACCCCGAATGCTCAAGGTGGATAAGGGGAACTAACGGCTGCGAGCATGCAGCTGGCATCAATGGCCAGGCGACAGATTTACTCTACTTTCCGCTGCTTGTTCTGGATTGGGATGTTAACCCTTTGATCCCACAGAGGTCAGCGGAGAAAACAACGTCTAAATATAGTCGGACAGACTGTAGCGACCCGGTTAGCACTCCCTAATTTTATCTAACTAGGCGGACACACTCTTACCACAGGGGCTCCAAGGTTCTCTCATTTCCGTGGGTGTAGCAACGTCCTATTCTTATGCGGACGCGAAATAACGAGTATTCTCTTGGATTTTAACTGAGCTATCACTCCGCGTGAAGGATAACCGGCTTGACTAAAGGAGACGGTCAGTCGCAGAGGGCAACGCGCTATAGACATTCGGTTTATTGAGTTCACCCTGGATAGTGACGCGGCCCTGGTTGTAGGTCGGGGCAAACTCTGAAATTGCTACTCATATACAGGGTTGTGCGCTCGTAAGGACTCCGCCCTGGCGTCGAAGCTAGTTCGACAAAATGGCCCCGGAAGACGTTATCTAGATGAGTCTGGGTGGCTTTCAAGAATTCGCCTATCTTGGTACCTGGCCCTAACGATCAGACAGGCGCACTGCTGATGAGGGCATGTACCGACCATACGGTTTTTCTTCAGGCAAATGCCCGTTCCGGTGTCCGTGGTCAAGACTCAAAATCTCCCCTAAGGCTGTCACGAATTAGAGTTTCGTGTGAGAGATTAGTGTTAGCCCTCAGTGGGTCCTAATAAGAACCCACTAAGTTAGCCTCGCCGGTACGCAGACCTAGAGACTTGTTGGTGGGCAGCTTCTGCGCTGTTGGCATTCCTGCATAAAGAGAAACGTTATCGGCTGCCGGTGTCATCTGCCAGTGCTGCCGAGTCGAGCTTGTAGCACTCATTGAAGGTGCTGTGAGCTGCACGCCTCCACTAATTTAATCCCCGTCGCAAAGTTGGTCAGACCAGGAGCCTTCAGTGCACTGTGACAACTGGAATTCCGACTCCGGAAAAGTGCAATGGGTGTCCAGTGGACGACTTCTTATGATTCGCGCCCGCGCCGCGTCCACAGGGGGACTCGGCGAAAAGTACAAAAGTGGGGGGAGCGCCCTGAGGAAAGTGGATCGTGCCGTCACCGGGTGACGGGTACAAGAACCTACTACTAGTGACGATGCTCTTAGATGGAGTGTAGCACGATCTTCACGGATAAAATAATGAAACAAACTGGGGCCGTTGGGCCCCCGAAGTATATGAACTGCGGCCATGTATGTTATGAATCCCCTCGGGTTCGGGGCTGCTCAAAAGTCTGCGTAGGACTCTCATCGGGACCTATACTAGATGGCCATGCGGAATACAGCGGCCTAGCTTTTATGCGATGTGCGGGGATAATTCTAATAGTTGCGGCTGGTCCATAACCGTGGACGTCGTATATTGGCAGACCTGCACAGTTGGTCCGATTAGACATACAGCACCCTTCTACATCCTGTTGTTCTGGAGAAGCCCACTCTAGTAGGACGGTTTACCTATGGACATGCGGTGTCCTAAATCATCTTACCGGAATTCTCATGCACTTCTGCCGTTCCCCCGAACATTCTAGTGGTGGGCTCGGGCTGCTGATAATCCACTCCATTGGGTGATACAAGAGGCGAGTTTGCCTTAGTTTGGGCAGGTCATGAAACCAAGCAACCGCATGCTTAGCTGGCTAATTGTTCGACTCGGCCACCAGCAAACTGTCGAAACGCGTAGAAAGTACAATTCCGTAAGCGAGTTCGGAATCCAGACCCGCGGCAATGCCCTCTCTTCCTACGCAGCGACCCCCTGTTTACACAGACAAGGCCCCGATGGCCAATCGTGAGTCTCGACGAGTGCCATAGAGGCGCCCTACCGGCGTCAGTGGGGGTGATTAATCACTTCACTGGTTCGCGGTGGGCTACGCGCTCACCTAGCTTCCCCGTAGTGTATTGACGAGTGTGGGCCCAGGATATGGAAGTTAAGGCTGGAGGAATAGTTAACCGTCGAACCTCCCCTGGACGAGATAGCACTAAATCCTGGAAATGAGACGGATCCGAGAGTTCTGATAATGGTCGAGATGGGACAACAGGCGAATCTCGCAAACGTGCTTGAAAATATAACGTAGCATCCCGCTTATGGGCTTTATCGCGAAACCTGACAGCGCTCCCTCAAACCCCTAGTTCGGAAAATCGTGTCGCTCCTACAGTCCATCACCCAACTTCAGTTGAGCAATAAGTTTAGGGCGCGTCACTCTATCTACTTTACTGCTGAATGCACCCTTGTGTGGATCGTAAACCTTCAAGTCCCTGGGACTGCCTTTTCTTGCGATGATAAGATTAAGTGTTTGCCCGTTTGCCAACCATCCCTCAAATCTCGTTGATGAACCCGCCCCTTCTGTTCCATTACCAATCGATGGCTCTAACTTTTCAATCTGTGGCATGGACCCCATAAAGAGGGACCAGCGTTCAGGGAGACTTCTACAAACTTACGTTACATTATACCGTTCCCGGTGAGCGTGCGGTCACGCATTCCAAAAGTACTCCGCGAGCCCTACGATCGACCTCTAGTATACTCCTGGTGCGGAGCAAACGATTTGAGCAGGCCTCATATAGAATGTGCAATCGCTCATTGTCGCAAAGCGACAACCAGTCACGCCGTTCGTCGACTACCACCCACTTCGTGGATGTGCGCCAAGTCTGTCTCCAGCTCTCAAGACTCATTGCAACTTGCCAATAACCTCAGTGCCTTGTCACTTCGAGTTCTTGAGGAATAGTCAGGGTCCTTAAACTTCATCGACTCGGCACAGTCTCTAGCCTCATTACTTCCCATTCCGGCCCGATGTGGAAGCGGTCCGGCTACTCAAATGCTCCCGGAGACCGAAGATTTCGGGACCTTTCGTTGTCAGACGCCAGTCATTGTTGCCTCTAACTGCATTGGAATCTGGCCCAAATAGAGATTGACCTCGGGAATCCGTCGCTGGGCAGGGCGTCTTACTCTGAACGGGACATCACTCCCGACCACCGGGGGGCGTCGTAGGTGCAGCAGACTGACAAATCCGTCCCAGTCGACTTATGTTCGCATGTCGTTATTAACTGCCTTGTACCTACGGTATGTACTGAACCACCGAGATCAGGGCAGGTTGAGCAAATTCATATCTCAAGGTGTGTCGAGAAAAAACGATTTAAGCTCTAGACCGGGAGTGCTGGTCAGAGTGTTCTGCTCACAAGGAAGCAATTCGGTGTTGGGTACCAATCAGAAATCACACCGTGGCTCTGAGCTTAATCCCTTGAGTTGGGCAACCGGGAGGACCAAGAGTACCGGCGACGGCCTCTGATTCTTGACGGTATAGGAGACATGCCTATACACGTTCGAGAGTAGTGACAGCATAGGATGCCTCAACGCTTTTACTCACGAGTGAGCGGTCCAATCTTGATGTCTAGACATGAGTTTTTCTAACGAGTGAACGGTATCCTATCCGCCCTCTGGATCAGCGGTTTCGGGGGTCCCTATCATGCTGTTCATATGCTCTGTCCATTGATTTGAGCCTACGGTATGAAGCACTCGCGGTGAAAAGGTTGCTGTAACCCGCGGGTGGTTACGATCTAATCTTCTGGTACGAAGGCGTGCCGTTACGCCAAAACTGGTACCTTGGTGTTTTTGCTGATCTCCAGAATTTTTGCTGTACTATTCCAATTTAGGAGTCATGATTCCGGAATGTCATTCCGACAAGCAGTATTCCCAACAGAGAACACTTGCATACTCGTTAATGATGAACACCTCTAATACGGAGACGCACCAGGTCTCCTAATCCCGGTTGTTTGCGACTCTGTTGTATATGATCAGAGAAAGGCGTATAAGAGCACCCCTATCTGTTGTCGTTTGGTCCGGACTCTTTAACTTCGGACCCAGACTCCCCCATTTCGCCATGCAACGCACCCATTTCAGGACTTTATCTGAAGCCTCTGCAAGTAGTACAGATCGCTTGCCCTCCTTGTTCGTTAGGTTAAAGTACACTTGACGATCACAGCCCCCATGTTCTTCTTAAGTCCTGGGCCTGCAAGACATGGTAACACTATAACCAATGCTACGTAATAAACGGATAAACAGAGCCATGACATTGGCACAGCATGCCGTGATCCGCTTACCAAATGATAAACTTGGTGATAATAGCAGTTTATTTGTAAGCCGTCGCGTGACAGAGGTCTGTAACTCTGATGAATTCCGAGCGCGCGTCGTCTGAAGTTGGTTGGCTAGGATTCGTCCTTAATGCAGTCTAAGCTGCCAGTAGCCACGAGAGGTAATTCACAAAGGTGGTACGCTGCTTCACAGTTCCAGGATGTAGAGTCAGAACCACTATAAAATCTAGTGCTCTTATGATAGGGATTGCCAGGTCGTTTGGAACTCGCTCAGACAGTCGCCGTCATAGAAATACATTACCTAAGCCCACGTGATATTGAACAGACCCCGCTATGGGATATAGTATACGAACCTAATAGAAGAACCGGATAACCTTGGTAAATATCTTCCAGAACGGGTCCGGCCGTTTAGCGTGATTTCAGCCCTTAGTGTCAACTTCTCTACTTGCTGGTGGATAAGTATTACCACTTTTATTCCTACCGGTAGACTACGCCATGAGTGTGCGAGGACGCAGTGGAGCCGGACCAAGGCATATCGACAGATATCTATCACAAGCCAAATACGCGGGCTTGCGGAGGCACCGATATTTGGTACTTTTCTTGGATTATAATCGTTTGGTAGGCCTTGTGGTAACCATGTGAGCGTCGTGGCGCTCGGAACTACTTT</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

11

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">+</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

12

</td>

<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">/0/1/00/00010////01/111/0110/10011110//10//1/1//1//0011/1111//0000//1/0/100110//110110/1/0010//0/0///0//10///0/1011/01000//0101110////111/100//001/000/10/10/1010/1///00/10//110//1///0/1101//1011/1/1//00/1//1/01/0////100/01/111/1000/0///01/1///10/1/1000/0/01010////000100//1/00/0/0//0/0/1001000///010/110011//0/00/011/0/00/0/1/10/01//00011011/10111/01110/01101/00//000///1/001/101/0/1000/111/110001/11100000/0/010/00/111//101//1//0010/01//01000/100//1//1/1010100///0001101//0/////1//1/011///1/011/100/101/1//1/1///1/010//01000111/0101110/101110000/10110000/0/11/0/10////0101101/000/1//1//1110/1/1011//01//000///1//1/0////110010100100/100/10000100/111001/010111//0/100//101/10//00101//1001011101/0///1/0011/00//10//001101//011/011/001001100/10011100100/011/1/100//0/1/0/00/00//////1//1/////01/100101100011/111/10/0/110001101/0010//0001/0/1//0/010011//000/00/10//1/00010/1////110///1//001////0//1//10/0000///1/1//0/10//10//0111////0110//1111///0/110001/11011101/1//1/0001/0/1011/110/11/00/1/1//0010010/0////1//00/00//00/01111/10/01/0//0/////11100/10/11/0001100//1//1/011101100/0/01110///00/0/0/1///10//10/010//0000///01/00/1/1/01///11/100/11110/111011///0101/1/000/11/00/0/1011/10/100/10111/001//101//1/1111011/11/1//1011100//0000/011100//110001/0/010/01101010000//11/1//0//1/110/1/0/1/0/0100/1//1//11/01//010//1/01//01//10110//01011//0/0///0///1001/11//01/011/01001/110//00/0/0/01/010/0//01101/010/00/00001/10////0//01111//0//000/0//110//00110//1//1000010100/0/1//0//101/1010100101/10/01000100/01000101/01///11/01//00010///00101/1010/0/000/00////1/001110/00/0010/10011/1//010/0011/011/00/011/0111/0/00//000///0100/1100101001/1//111/1/1/0///1/11/0/1/0/00//1110/0101///01/1/1////////101000/1/00/0//00/100//100/0/000///101/0//1/101/00011011000//1//1/11/10100//0/0/01000110101/00/1110/1010/111110000/1/0/1/00//1100/11/00/10/1000/00/01/00/01001111/1////1/0/1//0101/1/0011010110//1/0/0/110/1//00/11000/1/1/1//0010/011/0///10/0/0/011//10/10///0100000000//01100/00/00/0111//01//00/0110110/110/100010/1/1/1001/10///0//00//11/1111/110/1/011/101000//000/1//001///01/00011/1////1101/1/1///1//00/110///0/0/1011/01/0//1////011//001/11100/11/01//101///000//0001///101110/1//00001101/001110/010//1000100/0/////11/0/////11/01011/1/000/11/00000///10/0/11111///0///01001////0010010/00//0000/01/01/1001/110111/1/////1010/11011/1//11/011//0100/1000111/0010///1010//1/010/110/010/1010/0//0/11000001/1101/100/1//111/00//11////101/11001/1////110///1001///0////0/1011/1/10000100//101//111//1///000110/00011/0001001111/100011/0010/1////000/1/00//101000001100101001/0/0000010/10/0011001///110110000/010//1000/00000100//011////1111/1000/11//111/////0/110011/0/0/101//1//1/111/0001//101/11000///11100110///100/1/01//1000000//1101///1/0//00/10000/111001/0001/1//11//0/0/110///11111//11011//1//1/00001/1110/100///1/0/1100010//011/010/11/01111/01//01/01/1010000011/11111/000///1/00011/011101/0/101/0101///101000/01/01010///1/1//0111//1/1//000/001111////01111/0/0//10/101/11010/0//0/100/11/1010//10110/001///10/01000/11001//11110111//011/00/010///1/0/0/////1100/0001/111/000/10101000/110110000000/00///110/10011/0//1//1/000/11100/01011///00/0/001100///1//1101/110/10001/111///1//000/101011001/11101/1/11001/1001//1//0110010101///010//100011010//010/1/11/1/10//1///0011001/////1/1010001/01110/01101///000//0/1//1010/011//1//000100//010011111///0100101010//001//0//1/0/1//0//1//10/1/11//0//0/10/1011111///100/11/101/1//00//1/10/111/110000/000//01///100/0//1000/101011/100/1/0/10110/11010//1/1011/0/00000/1/01/01/01////0/111/1010101010//1101//0//000000111100///00110/11111//000/01/00/11011/01/010110001011/1110////10111/0/1//00//0/01/00110//00/00/000/////100/1//0/0010//0/0011101/110/010//0100/00///11001/1/011//000/1/110//1//111010///011//11//111/11//111101/11/000101/1/0/0/100///0/0110/1/01010//0011101001010/01/10/0/0000110000/00///11/01110100/1/1/1//1/110//00/1///100//00111/11101/0/010//10/0//1///00/010/0//10//0/00/0//0011/0/01110/11100/1////10//01010011000101/1100000//01/1011100111/010110/010111001/1/100/10111/0000////1/00/111/10010101/00/001/10//01/1/10//001/0111/10/1/101/1011/10/10/10/111/1/0/1/10/101/01/1010/001/01101///11/0/00////1/0001/1///1101000101001/11111/10100/0/01////10//1/0/10/000//01/101000000/1////0001101///01/01//011/1/1//0/1/101//011//11010//110/1110///11//0000//1110/101//11000/0111001/11//00/001/11011//10//0/01110/00/////0100/1/1/00/1////0/1//00/0011/0/10100/1/000100/0/001//00/0/111////111/10////01110000///00111///01101///0///110/0/0//1//010/1/1/11/010/////01//1110///11/01100//0//11/01///0/10/1/1/1100////1/1110101////00000/////01/10/1/010001110/10101/101000000/00111/01//11////01111001//0///001/0///111111011/1/1/11111001/00/1/10000//0/0///1101/11111/1/1000/0/1111/110/0110000010///110100/0///011/0/1//10011100//////11///10/0//0///1100101/10011001101000//1111/1/01/1/0//11/10001//1//1/100111/10//0/0000//0/01/1/011/000/1/1/1100/01//1/100/01001///111101/1/110/01//1001/1111/1//0/011/1/1001/1//0/1//11//01/10/11/101//0/11/000//00/110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