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GitLab

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<h3>

Andreas Tille pushed to branch master

at <a href="https://salsa.debian.org/med-team/libsmithwaterman">Debian Med / libsmithwaterman</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/libsmithwaterman/-/commit/47c76cf429402dc69719844a0b7fbd7881f35917">47c76cf4</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2021-10-13T09:54:46+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Packaging update

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/libsmithwaterman/-/commit/2b3c94ddd9d7aa2bb89c2ba891617a9af805701c">2b3c94dd</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2021-10-13T09:54:46+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/libsmithwaterman/-/commit/f55e2f650c8ef11dc46411c8e7ee635dbf0bd9be">f55e2f65</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2021-10-13T09:54:53+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Apply multi-arch hints.

+ libsmithwaterman-dev, libsmithwaterman0: Add Multi-Arch: same.

Changes-By: apply-multiarch-hints

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/libsmithwaterman/-/commit/70a489cb47796281e728d5207ac4e9cba170d7eb">70a489cb</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2021-10-13T10:01:16+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop symbols file to reduce maintenance burden

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/libsmithwaterman/-/commit/53ce280150a5ebf7f43ec8e3bfcbec39915a9935">53ce2801</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2021-10-13T10:02:22+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable

</pre>

</li>

</ul>

<h4>3 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">

debian/changelog

</a>

</li>

<li class="file-stats">

<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

debian/control

</a>

</li>

<li class="file-stats">

<a href="#6db7d55a60c5950a85af6f2284b113ce7dddb9fc">

<span class="deleted-file">

−

debian/libsmithwaterman0.symbols

</span>

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">

<a href="https://salsa.debian.org/med-team/libsmithwaterman/-/compare/cdaff5ab12195d1cb0c21d212758a5e207c23ba0...53ce280150a5ebf7f43ec8e3bfcbec39915a9935#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>

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1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libsmithwaterman (0.0+git20160702.2610e25-12) unstable; urgency=medium</span>

</pre>

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2

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">  * Packaging update</span>

</pre>

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4

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">  * Standards-Version: 4.6.0 (routine-update)</span>

</pre>

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5

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">  * Apply multi-arch hints.</span>

</pre>

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6

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">    + libsmithwaterman-dev, libsmithwaterman0: Add Multi-Arch: same.</span>

</pre>

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7

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">  * Drop symbols file to reduce maintenance burden</span>

</pre>

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">    Closes: #984207</span>

</pre>

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9

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org>  Wed, 13 Oct 2021 10:01:23 +0200</span>

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11

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>

</pre>

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1

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">libsmithwaterman (0.0+git20160702.2610e25-11) unstable; urgency=medium</span>

</pre>

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2

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<td class="new_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

13

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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>

</pre>

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3

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<td class="new_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">  [ Christian Ehrhardt ]</span>

</pre>

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<br>

</li>

<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

<a href="https://salsa.debian.org/med-team/libsmithwaterman/-/compare/cdaff5ab12195d1cb0c21d212758a5e207c23ba0...53ce280150a5ebf7f43ec8e3bfcbec39915a9935#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ Priority: optional</td>

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6

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>

</pre>

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7

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">               d-shlibs,</span>

</pre>

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8

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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">               libdisorder-dev</span>

</pre>

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<td class="old_line diff-line-num old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

9

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<td class="new_line diff-line-num old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.1</span></span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6.0</span></span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10

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<td class="new_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libsmithwaterman</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

11

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<td class="new_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libsmithwaterman.git</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

12

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<td class="new_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Homepage: https://github.com/ekg/smithwaterman</span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,6 +17,7 @@ Architecture: any</td>

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<td class="old_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Section: libs</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">         ${misc:Depends}</span>

</pre>

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<td class="old_line diff-line-num new" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Multi-Arch: same</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Description: determine similar regions between two strings or genomic sequences (lib)</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> The Smith–Waterman algorithm performs local sequence alignment; that is,</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> for determining similar regions between two strings or nucleotide or</span>

</pre>

</td>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,6 +34,7 @@ Depends: libsmithwaterman0 (= ${binary:Version}),</td>

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<td class="old_line diff-line-num" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">         ${shlibs:Depends},</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="new_line diff-line-num" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">         ${misc:Depends},</span>

</pre>

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<td class="old_line diff-line-num" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

35

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<td class="new_line diff-line-num" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">         libdisorder-dev</span>

</pre>

</td>

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<td class="old_line diff-line-num new" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">Multi-Arch: same</span>

</pre>

</td>

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<td class="old_line diff-line-num" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

36

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<td class="new_line diff-line-num" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">Description: determine similar regions between two strings or genomic sequences (devel)</span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

37

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<td class="new_line diff-line-num" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

39

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> The Smith–Waterman algorithm performs local sequence alignment; that is,</span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

38

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<td class="new_line diff-line-num" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

40

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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> for determining similar regions between two strings or nucleotide or</span>

</pre>

</td>

</tr>

</table>

<br>

</li>

<li id="6db7d55a60c5950a85af6f2284b113ce7dddb9fc">

<a href="https://salsa.debian.org/med-team/libsmithwaterman/-/compare/cdaff5ab12195d1cb0c21d212758a5e207c23ba0...53ce280150a5ebf7f43ec8e3bfcbec39915a9935#6db7d55a60c5950a85af6f2284b113ce7dddb9fc"><strong>debian/libsmithwaterman0.symbols</strong>

deleted

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libsmithwaterman.so.0 libsmithwaterman0 #MINVER#</span>

</pre>

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"> _Z10mergeCIGARRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> _Z10splitCIGARRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> _Z11homopolymerNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> _Z12isRepeatUnitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> _Z12repeatCountslRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> _Z15countMismatchesRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_S4_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> _Z15stablyLeftAlignNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS4_S4_Riib@Base 0.0+git20160702.2610e25</span>

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<td class="old_line diff-line-num old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> _Z9joinCIGARRKSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> _Z9leftAlignRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_S5_Rib@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> _ZN11IndelAllele10readLengthEv@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> _ZN11IndelAllele11homopolymerEv@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> _ZN11IndelAllele15referenceLengthEv@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh13Directions_UPE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh15Directions_LEFTE@Base 0.0+git20160702.2610e25</span>

</pre>

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<td class="new_line diff-line-num old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh15Directions_STOPE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh15repeat_size_maxE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh19CreateScoringMatrixEv@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh19Directions_DIAGONALE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh23EnableEntropyGapPenaltyEf@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh23FLOAT_NEGATIVE_INFINITYE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh26CorrectHomopolymerGapOrderEjj@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh27EnableHomoPolymerGapPenaltyEf@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh31EnableRepeatGapExtensionPenaltyEff@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> _ZN19CSmithWatermanGotoh5AlignERjRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS6_S9_@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> _ZN19CSmithWatermanGotohC1Effff@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> _ZN19CSmithWatermanGotohC2Effff@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> _ZN19CSmithWatermanGotohD1Ev@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> _ZN19CSmithWatermanGotohD2Ev@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman13Directions_UPE@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman14CalculateScoreERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_jjRfjj@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman15Directions_LEFTE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman15Directions_STOPE@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman17Position_REF_ZEROE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman19CreateScoringMatrixEv@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman19Directions_DIAGONALE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman19Position_QUERY_ZEROE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman20ReinitializeMatricesERKhRKjS3_St4pairIS4_IjjES5_E@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman23FLOAT_NEGATIVE_INFINITYE@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman26CorrectHomopolymerGapOrderEjj@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman27EnableHomoPolymerGapPenaltyEf@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman27Position_REF_AND_QUERY_ZEROE@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman30Position_REF_AND_QUERO_NONZEROE@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman5AlignERjRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS6_S9_RSt4pairISA_IjjESB_E@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> _ZN20CBandedSmithWaterman9TracebackERjRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS6_S9_jjjj@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> _ZN20CBandedSmithWatermanC1Effffj@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> _ZN20CBandedSmithWatermanC2Effffj@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> _ZN20CBandedSmithWatermanD1Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> _ZN20CBandedSmithWatermanD2Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> (arch=!ppc64el) _ZNSt12_Vector_baseIfSaIfEED1Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> (arch=!ppc64el) _ZNSt15_Rb_tree_headerC1EOS_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> (arch=!ppc64el optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> (arch=!s390x optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> _ZNSt6vectorI11IndelAlleleSaIS0_EED1Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> _ZNSt6vectorI11IndelAlleleSaIS0_EED2Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> (arch=!s390x optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE17_M_realloc_insertIJSD_EEEvN9__gnu_cxx17__normal_iteratorIPSD_SF_EEDpOT_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED1Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED2Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> (optional)_ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 0.0+git20160702.2610e25</span>

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<td class="old_line diff-line-num old" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> (arch=!s390x) _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE17_M_realloc_insertIJRKS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> (arch=!s390x optional)_ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EED1Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EED2Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> (arch=!s390x optional)_ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> (arch=!s390x !ppc64el optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> (arch=!s390x) _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.2610e25</span>

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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> _ZeqRK11IndelAlleleS1_@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> _ZlsRSoRK11IndelAllele@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> _ZltRK11IndelAlleleS1_@Base 0.0+git20160702.2610e25</span>

</pre>

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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> _ZneRK11IndelAlleleS1_@Base 0.0+git20160702.2610e25</span></pre>

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