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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/prodigal">Debian Med / prodigal</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/c63f63869373b9bb6a8e1b5c42931c547fe85697">c63f6386</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:47:02+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/44b0b6a16c50c4a00f71faf09df9795eb2704405">44b0b6a1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:50:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/93a05ce5359a4a98733f84ca986be6f694626e3b">93a05ce5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:50:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/97e350df79c9493742e3f26fcd26dd806c55feb0">97e350df</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:50:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/7ee4307ba82c9e739a3d6c11945fd513c929c40d">7ee4307b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:50:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/c079877241d667f687c7556b2c682460704ab59f">c0798772</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:50:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/6439d91c9b465997cf4f39f48307a8230f947079">6439d91c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:50:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/cae265594de35573c8740e694de8036be8f29d14">cae26559</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:50:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/3ae6017a6436bce6f796f1983cdf67178ddb5ae9">3ae6017a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:50:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: watch file standard 4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/prodigal/-/commit/6694723513ac3b868a6cf9c70239242ee4719367">66947235</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-13T09:58:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/prodigal/-/compare/1db85d02c441f2a272fd5c61944015f731895392...6694723513ac3b868a6cf9c70239242ee4719367#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">prodigal (1:2.6.3-5) unstable; urgency=medium</span>
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<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github</span>
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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Secure URI in copyright format (routine-update)</span>
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> Repository-Browse.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * watch file standard 4 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 13 Oct 2021 09:50:56 +0200</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">prodigal (1:2.6.3-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> * Finalise the fix proposed by Adrian Bunk</span>
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<a href="https://salsa.debian.org/med-team/prodigal/-/compare/1db85d02c441f2a272fd5c61944015f731895392...6694723513ac3b868a6cf9c70239242ee4719367#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/prodigal/-/compare/1db85d02c441f2a272fd5c61944015f731895392...6694723513ac3b868a6cf9c70239242ee4719367#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,11 +4,12 @@ Uploaders: Olivier Sallou <osallou@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (<span class="idiff left">></span>= 1<span class="idiff right">1~</span>)</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.4</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left">-compat</span> (= 1<span class="idiff right">3</span>)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6.0</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/prodigal</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/prodigal.git</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: http://prodigal.ornl.gov/</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: prodigal</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/prodigal/-/compare/1db85d02c441f2a272fd5c61944015f731895392...6694723513ac3b868a6cf9c70239242ee4719367#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: prodigal</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: https://github.com/hyattpd/prodigal/releases</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,7 +15,7 @@ Files: debian/tests/test-data/genome.fna</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Copyright: 2018 © EMBL-EBI</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">License: unrestricted</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> EMBL-EBI itself places no additional restrictions on the use or redistribution</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> of the data available via its online services other than those provided by the<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> of the data available via its online services other than those provided by the</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> original data owners.</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Comment: Ensembl Bacteria release 38</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> See http://bacteria.ensembl.org/Candidatus_carsonella_ruddii_dc/Info/Index</span>
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<a href="https://salsa.debian.org/med-team/prodigal/-/compare/1db85d02c441f2a272fd5c61944015f731895392...6694723513ac3b868a6cf9c70239242ee4719367#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/prodigal/-/compare/1db85d02c441f2a272fd5c61944015f731895392...6694723513ac3b868a6cf9c70239242ee4719367#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/hyattpd/prodigal/issues</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/hyattpd/prodigal/issues/new</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Author: ></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Doug Hyatt and Gwo-Liang Chen and Philip F. Locascio and Miriam L. Land</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,3 +24,5 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> Entry: SCR_011936</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> Entry: prodigal</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Repository: https://github.com/hyattpd/prodigal.git</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Repository-Browse: https://github.com/hyattpd/prodigal</span></pre>
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<a href="https://salsa.debian.org/med-team/prodigal/-/compare/1db85d02c441f2a272fd5c61944015f731895392...6694723513ac3b868a6cf9c70239242ee4719367#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">version=<span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">version=<span class="idiff left right">4</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">opts=uversionmangle=s/(\d\.)(\d)(\d)$/$1$2.$3/ \</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> https://github.com/hyattpd/prodigal/releases .*/<span class="idiff left right">archive/</span>v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)</span></pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> https://github.com/hyattpd/prodigal/releases .*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)</span></pre>
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