<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/atropos">Debian Med / atropos</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/atropos/-/commit/21138b33c6417a6a13a4a46757023c7c2b84db67">21138b33</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-14T11:14:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.0~a7+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#c47a2ee063b5c6e29cdd17dba46bc428c75fdd77">
atropos/adapters/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#999dde37843872160bf3cea6591d362f8c546290">
atropos/commands/console.py
</a>
</li>
<li class="file-stats">
<a href="#b6212cfdaaf9be97cdcaefab72f0c941091e316f">
atropos/commands/legacy_reports.py
</a>
</li>
<li class="file-stats">
<a href="#c89d4cbf28387962db34af725bfd1bfacd09a5bf">
atropos/commands/metrics.py
</a>
</li>
<li class="file-stats">
<a href="#d2591a9eb128ae6e7a47042f24b4698598c45c74">
atropos/commands/multicore.py
</a>
</li>
<li class="file-stats">
<a href="#3942ddad7568c2b1fb1ede1f7a18930f8887d8fe">
atropos/commands/qc/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#444020cef2439901828c8a59359e862ebf8152f3">
atropos/commands/reports.py
</a>
</li>
<li class="file-stats">
<a href="#afa0ad285b2a495dc02adc608a99dd5447329b34">
atropos/commands/trim/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#0864e0c6b4e7729a1db0884e0290d41b30742bc0">
atropos/commands/trim/console.py
</a>
</li>
<li class="file-stats">
<a href="#b32a478dbebb5a4e7b1668fc8944cf4d01533386">
atropos/commands/trim/modifiers.py
</a>
</li>
<li class="file-stats">
<a href="#b994c2bfdfeded1d9939b62348413670596ea884">
atropos/console.py
</a>
</li>
<li class="file-stats">
<a href="#c2c5b4325646953df727d8ce7ff74628d1007c81">
atropos/errors.py
</a>
</li>
<li class="file-stats">
<a href="#4cab8e5de9ba992c567e83558baf0fafbbda11fe">
atropos/io/formatters.py
</a>
</li>
<li class="file-stats">
<a href="#e76d099ad52c23f782bfcac75c889bbfd069ea30">
atropos/io/readers/_impl.py
</a>
</li>
<li class="file-stats">
<a href="#ba427c772558eaa37f338038bc9531c2bf20c4c2">
atropos/io/readers/_readers.pyx
</a>
</li>
<li class="file-stats">
<a href="#25b9ae6883d4ce69af052078d5f5448a22cd1d8b">
atropos/io/sequence/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#fc5872dc52f8584e4671db651427577eac919132">
atropos/io/sequence/_sequence.pyx
</a>
</li>
<li class="file-stats">
<a href="#a5e3b2a7f0c3ea3ec291848ee551d60a96890ac2">
atropos/utils/ngs.py
</a>
</li>
<li class="file-stats">
<a href="#a79f5b547754f5a3be367b5ef04212d3289004c0">
paper/containers/tools/atropos-paper/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#811ae93c21bb5e46cf5f30a1773fe0bc75a3e70b">
requirements-extra.txt
</a>
</li>
<li class="file-stats">
<a href="#19359a61ae2446b51b549167b014da2fcf265768">
requirements.txt
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#626af34e8204774ea46e20955936146dedc828eb">
tests/conftest.py
</a>
</li>
<li class="file-stats">
<a href="#74b57363e4a796d01e531764521986e650db8505">
tests/data/expected/paired_insert.sam
</a>
</li>
<li class="file-stats">
<a href="#17affa1e8c42f198d4c7bbbbaa141d9a2b507df9">
tests/data/input/paired.sam
</a>
</li>
<li class="file-stats">
<a href="#4c91f80a781e5621e92c74fdd1bddaa8ef6b43e7">
tests/test_adapters.py
</a>
</li>
<li class="file-stats">
<a href="#d4c53fc00ad0cb028ab64da600d5893ec12de035">
tests/test_atropos.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/atropos/-/commit/21138b33c6417a6a13a4a46757023c7c2b84db67">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/atropos/-/commit/21138b33c6417a6a13a4a46757023c7c2b84db67"}}</script>
</p>
</div>
</body>
</html>