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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/239f8e94d10196af334a7f9173928f18103b028f">239f8e94</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T09:50:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/429e2c33265d2692d2582261a719abf9d7e814d2">429e2c33</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T09:50:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/63ae020ce1ae82f61ee8889eb7d9d50a5794df24">63ae020c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T09:50:58+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 6.9.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e23713e45184fe58e2d4f134e25036a1f7a49d0f">e23713e4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T09:51:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/6.9.1'
Update to upstream version '6.9.1'
with Debian dir 405961357ded6f063bb4799af50d3dffb8a9cde8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/b9759124ab01740fe7e0c398261601e330904136">b9759124</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T09:51:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/3b87785a3e6c89b429969025c68fdba63b4334d1">3b87785a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T09:53:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/cab1199163136c9c83c2553d7829b565910abd26">cab11991</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T09:53:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/7c138b80179e499245d6f534f1f844af9704fcd1">7c138b80</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T11:47:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/808944fda91ded3cefe3dfccfd3d260181de9ed6">808944fd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T11:48:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/b1758d20e2c88faa5944994ec09c8512ff7c2d6f">b1758d20</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T15:44:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: python3-requests-mock and TODO: failed tests
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#05a721ebe3ba0754116825ed1359ff1785f4bbac">
.dockerignore
</a>
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<li class="file-stats">
<a href="#a03585ab89eed5e0782a1875b2d8153b97865d30">
.github/ISSUE_TEMPLATE/bug_report.md
</a>
</li>
<li class="file-stats">
<a href="#99d2d4406193bf0dc3e7b84a6c9b9109997a4864">
<span class="new-file">
+
.github/pull_request_template.md
</span>
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</li>
<li class="file-stats">
<a href="#fcc8b73a70c3f6bccb6382487e59d0069f657074">
<span class="new-file">
+
.github/workflows/conventional-prs.yml
</span>
</a>
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<li class="file-stats">
<a href="#da5bd69cc72d5ccfc2244e20835ef90782c893fe">
<span class="deleted-file">
−
.github/workflows/docker-publish-release.yml
</span>
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</li>
<li class="file-stats">
<a href="#5c5ee4afb3fab2334411b3025d137240676c72c3">
.github/workflows/docker-publish.yml
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<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
.github/workflows/main.yml
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</li>
<li class="file-stats">
<a href="#40aac2d0a8a09ef6a80810a34d290c86c19a709e">
<span class="new-file">
+
.github/workflows/release-please.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#db770177f8d41ee439a664061a4b93e4609fd2e8">
<span class="new-file">
+
.gitpod.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
<span class="new-file">
+
CHANGELOG.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#2deeac294ac5d9dfbbf7dcfc6fa60d6a68a7da89">
<span class="deleted-file">
−
debian/patches/0001-Use-the-inbuild-sphinx.ext.napoleon.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#6cbb5336bfa272ad2629f5ab1fabba4240e2114e">
debian/patches/0008-remove_sphinx.ext.patch
</a>
</li>
<li class="file-stats">
<a href="#3a60a3d8ad77c5d7b9f50f6d9e07887ec385a803">
debian/patches/local_javascript.patch
</a>
</li>
<li class="file-stats">
<a href="#e246f69e945a7c2e9a8e25cfacfcac7714c92b69">
debian/patches/python3.patch
</a>
</li>
<li class="file-stats">
<a href="#aef4fc475d9c2698d0de9e80b3256895c791f41e">
debian/patches/remove_ccbysa_snippets.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#260fb267aa59c740952b443e87e306a192a8d82e">
debian/patches/workaround_sphinx_issue.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#1f5208c48761240351812af26bac8e1c55204276">
doc-environment.yml
</a>
</li>
<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
</a>
</li>
<li class="file-stats">
<a href="#aa070a9c9eb13bc0377eb60b4ef071df17152ac7">
docs/executing/caching.rst
</a>
</li>
<li class="file-stats">
<a href="#5026e4863ea12b5792ff52f548d70284c3c1a181">
docs/executing/cli.rst
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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