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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bamtools">Debian Med / bamtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/26d50115502aa26c8d8876b825eaba23d70d50d0">26d50115</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T15:08:52+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">SONAME is only MAJOR.MINOR
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</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/50f032764cf76658ef4ce33902c5630e4c2d1aea">50f03276</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T15:10:10+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove Dominique Belhachemi from Uploaders
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/8b1099d9475794e6211b49b024dea0fd7ccb928f">8b1099d9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T15:11:13+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unneeded lintian override
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/2b4110c88475808a96c46998e2e4977304178704">2b4110c8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-15T15:12:50+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>5 changed files:</h4>
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<li class="file-stats">
<a href="#8169b108ef2c9d2255b31f6d3772a71cda2af574">
<span class="deleted-file">
−
debian/bamtools.lintian-overrides
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#15c817ac9a74289d2d43e2247d6ace4d9b5a09bd">
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+
debian/patches/fix_soversion.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="8169b108ef2c9d2255b31f6d3772a71cda2af574">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/f368869f1f7f8ee34635fdcf6e4c3c005e33379c...2b4110c88475808a96c46998e2e4977304178704#8169b108ef2c9d2255b31f6d3772a71cda2af574"><strong>debian/bamtools.lintian-overrides</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"># False positive</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">bamtools: description-contains-duplicated-word merge*</span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/f368869f1f7f8ee34635fdcf6e4c3c005e33379c...2b4110c88475808a96c46998e2e4977304178704#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">bamtools (2.5.2+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<td class="new_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * New upstream version, fixes FTBFS with gcc-11. Closes: #983981</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * refresh patches including reworking the shared & static library patch</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Fri, 17 Sep 2021 16:43:49 +0200</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * SONAME is only MAJOR.MINOR</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Remove Dominique Belhachemi from Uploaders (Thanks Dominique for all</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> your work)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Remove unneeded lintian override</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 15 Oct 2021 15:11:20 +0200</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">bamtools (2.5.1+dfsg-9) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/f368869f1f7f8ee34635fdcf6e4c3c005e33379c...2b4110c88475808a96c46998e2e4977304178704#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,6 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Michael R. Crusoe <crusoe@debian.org>,</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org>,</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Kevin Murray <spam@kdmurray.id.au>,</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> Dominique Belhachemi <domibel@debian.org></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,7 +55,7 @@ Package: libbamtools-dev</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext">Depends: libbamtools2.5<span class="idiff left right">.2</span> (= ${binary:Version}),</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">Depends: libbamtools2.5 (= ${binary:Version}),</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> ${devlibs:Depends}</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext">Suggests: libbamtools-doc (= ${binary:Version})</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -74,7 +73,7 @@ Description: C++ API for manipulating BAM (genome alignment) files</td>
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74
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> This is the developers API package.</span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext">Package: libbamtools2.5<span class="idiff left right">.2</span></span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext">Package: libbamtools2.5</span>
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78
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext">Architecture: any</span>
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79
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext">Section: libs</span>
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<li id="15c817ac9a74289d2d43e2247d6ace4d9b5a09bd">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/f368869f1f7f8ee34635fdcf6e4c3c005e33379c...2b4110c88475808a96c46998e2e4977304178704#15c817ac9a74289d2d43e2247d6ace4d9b5a09bd"><strong>debian/patches/fix_soversion.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: SONAME is only MAJOR.MINOR</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Fri, 15 Oct 2021 15:08:32 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/src/CMakeLists.txt</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -120,7 +120,7 @@</span> add_library(</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> # as Bamtools does not yet guarantee a stable ABI</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> set_target_properties(</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> BamTools PROPERTIES</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- SOVERSION ${BamTools_VERSION}</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ SOVERSION "${BamTools_VERSION_MAJOR}.${BamTools_VERSION_MINOR}"</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> OUTPUT_NAME bamtools</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> CXX_STANDARD 11</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> CXX_STANDARD_REQUIRED ON</span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/f368869f1f7f8ee34635fdcf6e4c3c005e33379c...2b4110c88475808a96c46998e2e4977304178704#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">0001-ignore-thirdparty-and-fix-jsoncpp.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">shared_and_static.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">fix_soversion.patch</span></pre>
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