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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/54d650df05d28b49a1f78e857c3f807948584648">54d650df</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-10-17T14:18:15+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add B-D on python3-smart-open
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</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/ba3078df9950162eaaaa3dd79c99266aff7257e0">ba3078df</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-10-17T14:19:10+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: Add versioned Dep on pulp (>= 2.0)
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/03f9a847805650dcb4096726b33b1688eff13184">03f9a847</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-10-17T14:23:58+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">[skip ci] Interim changelog entry
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/snakemake/-/compare/b1758d20e2c88faa5944994ec09c8512ff7c2d6f...03f9a847805650dcb4096726b33b1688eff13184#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">snakemake (6.9.1-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="new_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Team upload.</span>
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<td class="new_line diff-line-num" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * New upstream version</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,15 +10,14 @@ snakemake (6.9.1-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright (routine-update)</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Build-Depends: python3-requests-mock</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> TODO:</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">...</span>
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<td class="new_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">FAILED tests/tests.py::test_github_issue1069 - AssertionError: expected succe...</span>
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<td class="new_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">FAILED tests/tests.py::test_touch_pipeline_with_temp_dir - AssertionError: ex...</span>
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<td class="old_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="new_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">FAILED tests/tests.py::test_all_temp - AssertionError: expected successful ex...</span>
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<td class="old_line diff-line-num old" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="new_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">= 169 failed, 35 passed, 11 skipped, 57 deselected, 1 xfailed, 1 warning in 15.17s =</span>
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<td class="old_line diff-line-num old" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="new_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">E: pybuild pybuild:353: test: plugin custom failed with: exit code=1: python3.9 -m pytest -v tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_ancient'</span>
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<td class="new_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> [ Nilesh Patra ]</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> * d/control:</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> + Add versioned Dep on pulp (>= 2.0)</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> + Add B-D on python3-smart-open</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">TODO: pulp new version is needed, which has a dep on amply. Mail sent to -openstack mailing list</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">to update this one.</span>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> -- <span class="idiff left">Andreas Tille</span> <<span class="idiff">t</span>il<span class="idiff">l</span>e@debian.org> <span class="idiff">Fri</span>, 1<span class="idiff">5</span> Oct 2021 <span class="idiff">09:50:57</span> +0<span class="idiff right">2</span>00</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> -- <span class="idiff left">Nilesh Patra</span> <<span class="idiff">n</span>ile<span class="idiff">sh</span>@debian.org> <span class="idiff">Sun</span>, 1<span class="idiff">7</span> Oct 2021 <span class="idiff">14:19:21</span> +0<span class="idiff right">0</span>00</span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">snakemake (5.24.1-2) unstable; urgency=medium</span>
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/snakemake/-/compare/b1758d20e2c88faa5944994ec09c8512ff7c2d6f...03f9a847805650dcb4096726b33b1688eff13184#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,6 +39,7 @@ Build-Depends: ca-certificates,</td>
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39
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> python3-requests-mock <!nocheck>,</span>
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40
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40
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> python3-rpy2,</span>
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41
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> python3-setuptools,</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> python3-smart-open (>= 3.0),</span>
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42
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> python3-sphinx <!nodoc>,</span>
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43
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44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> python3-sphinx-argparse <!nodoc>,</span>
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44
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> python3-sphinx-bootstrap-theme <!nodoc>,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -71,7 +72,7 @@ Depends: ca-certificates,</td>
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71
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> python3-nbformat,</span>
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72
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73
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> python3-pkg-resources,</span>
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73
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> python3-psutil,</span>
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74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> python3-pulp (<span class="idiff left right"><<</span> 2.0~),</span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> python3-pulp (<span class="idiff left right">>=</span> 2.0~),</span>
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75
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> python3-ratelimiter,</span>
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76
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> python3-requests,</span>
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77
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> python3-toposort,</span>
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