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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bppsuite">Debian Med / bppsuite</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bppsuite/-/commit/fe7c9be33eb24c5e3cd698a2573c8baee4b859a1">fe7c9be3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T15:37:42+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bppsuite/-/commit/fa3d914d7af8f5dd149a200f840843043b33c815">fa3d914d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T15:37:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bppsuite/-/commit/1dc0cb82d3dbb86114518896d26126c2eeb766dc">1dc0cb82</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T15:37:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bppsuite/-/commit/53b02a79419b8ee7d3bb38c31dc373538adab310">53b02a79</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T15:37:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.0.0'
Update to upstream version '3.0.0'
with Debian dir cbca8ab9d69aa1907d12412c4d44d63757b873d7</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bppsuite/-/commit/adc072a5dc8a7471aeec60aba78dec6309426ea1">adc072a5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T15:37:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bppsuite/-/commit/603ca2f07787c70b656ffed451ad6763cdd4a63a">603ca2f0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T15:48:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: libeigen3-dev
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bppsuite/-/commit/03eeedff24a1f6d59b0dbb7d53c0564f87413750">03eeedff</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T21:16:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Try some patch to fix includes PATH but it seems upstream is building against a new version of libbpp-phyl which is not publicly released yet.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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.gitignore
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<a href="#b052f4d466d055659852c2064a1fd57e520b0f15">
Examples/MaximumLikelihood/Codons/BranchModel/ML.bpp
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<a href="#1b62606a1f0575a4941e2285466371948e0ef3bb">
Examples/MaximumLikelihood/Codons/CladeModel/ML.bpp
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Examples/MaximumLikelihood/Codons/CladeModel/Mixed/ML.bpp
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Examples/MaximumLikelihood/Codons/CladeModel/Mixed/MixedLik.bpp
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Examples/MaximumLikelihood/Codons/M0/Ancestor.bpp
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Examples/MaximumLikelihood/Codons/M0/ML.bpp
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Examples/MaximumLikelihood/Codons/M1/Ancestor.bpp
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Examples/MaximumLikelihood/Codons/M1/ML.bpp
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Examples/MaximumLikelihood/Codons/M2/Ancestor.bpp
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Examples/MaximumLikelihood/Codons/M2/ML.bpp
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Examples/MaximumLikelihood/Codons/MultiData/multidata.bpp
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Examples/MaximumLikelihood/Codons/MultiData/trees.newick
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<a href="#5435ee109d168b8e7cef2368cb22439b9b65ed0c">
Examples/MaximumLikelihood/Nucleotides/Homogeneous/Ancestor.bpp
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<a href="#c3d39a0c580a4348bc92693eede191532efed678">
Examples/MaximumLikelihood/Nucleotides/Homogeneous/ML.bpp
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Examples/MaximumLikelihood/Nucleotides/Homogeneous/SeqGen.bpp
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Examples/MaximumLikelihood/Nucleotides/NonHomogeneousGG/MLNHGG.bpp
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<a href="#a67782324f16a2bbddb2f29535b05b82065c84e9">
Examples/MaximumLikelihood/Nucleotides/NonHomogeneousGeneral/Ancestor.bpp
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<a href="#cf2042d41d29fae67799c899f552cee7fb7d5538">
Examples/MaximumLikelihood/Nucleotides/NonHomogeneousGeneral/MLNH.bpp
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Examples/MaximumLikelihood/Proteins/Homogeneous/ML.bpp
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Examples/MaximumLikelihood/Proteins/Mixed/ML.bpp
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Examples/MaximumLikelihood/Proteins/Mixed/MixedLik.bpp
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<a href="#a8a1e92cca6b25aea7a0b4a31d12005a09f484cf">
Examples/SequenceSimulation/Homogeneous/SeqGen.bpp
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<a href="#4b662a66ef2cc3625bbc23af0f261fa0e1b515c2">
Examples/SequenceSimulation/HomogeneousCovarion/SeqGen.bpp
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Examples/SequenceSimulation/Mixture/SeqGen.bpp
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Examples/SequenceSimulation/MultiModel/AutoCorr.bpp
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Examples/SequenceSimulation/MultiModel/Partition.bpp
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Examples/SequenceSimulation/NonHomogeneous/SeqGen.bpp
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