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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-biom-format">Debian Med / python-biom-format</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/-/commit/321f38381be91b42c2817a36815cf0d2c4d3bcef">321f3838</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T11:12:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/-/commit/b7b1ba9e70731c06abd46df1505a480ff915f1c9">b7b1ba9e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T11:13:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/-/commit/46f6d595ee272fba2f9333afd6c47497ca2c350a">46f6d595</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-18T11:13:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Apply multi-arch hints.
+ python-biom-format-doc: Add Multi-Arch: foreign.
Changes-By: apply-multiarch-hints
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/-/commit/f9c2de9b16eaccec922e812b08fd8fdaed22dcab">f9c2de9b</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-10-18T11:36:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add_javascript() was deprecated in v1.8 and removed in v4.0. add_js_file() is a successor of the API
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#c5673da3a14cd277ab5b3f4b4f9cb0b1741d1b88">
<span class="new-file">
+
debian/patches/sphinx_add_javascript.patch
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-biom-format/-/compare/7d1781353f4539cc3bfac551ba35e1d0ebe0e13b...f9c2de9b16eaccec922e812b08fd8fdaed22dcab#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-biom-format (2.1.10-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github</span>
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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Apply multi-arch hints.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> + python-biom-format-doc: Add Multi-Arch: foreign.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * add_javascript() was deprecated in v1.8 and removed in v4.0. add_js_file()</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> is a successor of the API</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 18 Oct 2021 11:12:54 +0200</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">python-biom-format (2.1.10-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Team upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/python-biom-format/-/compare/7d1781353f4539cc3bfac551ba35e1d0ebe0e13b...f9c2de9b16eaccec922e812b08fd8fdaed22dcab#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,7 +22,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> python3-matplotlib,</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> python3-pytest <!nocheck>,</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> python3-pytest-cov <!nocheck></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5</span>.0</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">6</span>.0</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/python-biom-format</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/python-biom-format.git</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Homepage: https://biom-format.org/</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,6 +66,7 @@ Architecture: all</td>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext">Section: doc</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> ${sphinxdoc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">Multi-Arch: foreign</span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext">Description: documentation for BIOM format</span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> The BIOM file format (canonically pronounced biome) is designed to be a</span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> general-use format for representing biological sample by observation</span>
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<a href="https://salsa.debian.org/med-team/python-biom-format/-/compare/7d1781353f4539cc3bfac551ba35e1d0ebe0e13b...f9c2de9b16eaccec922e812b08fd8fdaed22dcab#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,3 +5,4 @@ enable_sloppy_sphinx_build.patch</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">sphinx_1.6.patch</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">sphinx.ext.pngmath.patch</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">posix_shell.patch</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">sphinx_add_javascript.patch</span></pre>
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<li id="c5673da3a14cd277ab5b3f4b4f9cb0b1741d1b88">
<a href="https://salsa.debian.org/med-team/python-biom-format/-/compare/7d1781353f4539cc3bfac551ba35e1d0ebe0e13b...f9c2de9b16eaccec922e812b08fd8fdaed22dcab#c5673da3a14cd277ab5b3f4b4f9cb0b1741d1b88"><strong>debian/patches/sphinx_add_javascript.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Mon, 18 Oct 2021 11:13:14 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: add_javascript() was deprecated in v1.8 and removed in v4.0. add_js_file() is a successor of the API.</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/doc/conf.py</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/doc/conf.py</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -235,4 +235,4 @@</span> man_pages = [</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> # Add the 'copybutton' javascript, to hide/show the prompt in code</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> # examples, originally taken from scikit-learn's doc/conf.py</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> def setup(app):</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- app.add_javascript('copybutton.js')</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ app.add_js_file('copybutton.js')</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-biom-format/-/compare/7d1781353f4539cc3bfac551ba35e1d0ebe0e13b...f9c2de9b16eaccec922e812b08fd8fdaed22dcab#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> https://github.com/biocore/biom-format/releases .*/<span class="idiff left right">archive/</span>(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> https://github.com/biocore/biom-format/releases .*/(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span></pre>
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