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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/sra-sdk">Debian Med / sra-sdk</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/66d53d7b94735488e15005bcf8a096cdf6b0ebba">66d53d7b</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-10-18T07:21:25+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skip test that test needs a *lot* of memory
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#6d43332696b491fe4310ec9234e20490d8097787">
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+
debian/patches/skip_test_using_lots_of_memory.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/66d53d7b94735488e15005bcf8a096cdf6b0ebba#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,6 +5,7 @@ sra-sdk (2.11.2+dfsg-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Bump versioned Build-Depends: libngs-sdk-dev (>= 2.11.2)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Skip test that test needs a *lot* of memory</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> [ Aaron M. Ucko ]</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * d/p/fix_libngs_linkage.patch (new): Substitute ngs-c++ library for</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +13,7 @@ sra-sdk (2.11.2+dfsg-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * debian/rules: Stop renaming kget (to avoid a file conflict, #851219)</span>
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<td class="new_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> now that it's retired altogether.</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> -- A<span class="idiff left">aron M. Ucko <ucko</span>@debian.org> <span class="idiff">Thu</span>, 1<span class="idiff">4</span> Oct 2021 <span class="idiff right">16:27:47 -04</span>00</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> -- A<span class="idiff left">ndreas Tille <tille</span>@debian.org> <span class="idiff">Fri</span>, 1<span class="idiff">5</span> Oct 2021 <span class="idiff right">07:01:52 +02</span>00</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">sra-sdk (2.10.9+dfsg-2) unstable; urgency=medium</span>
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<td class="new_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/66d53d7b94735488e15005bcf8a096cdf6b0ebba#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,3 +21,4 @@ use_exposed_headers.patch</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">#reenable_legacy_schema_in_sra_load.patch</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">skip_broken_loaders.patch</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">fix_libngs_linkage.patch</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">skip_test_using_lots_of_memory.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/66d53d7b94735488e15005bcf8a096cdf6b0ebba#6d43332696b491fe4310ec9234e20490d8097787"><strong>debian/patches/skip_test_using_lots_of_memory.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 15 Oct 2021 07:01:52 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Skip test that test needs a *lot* of memory -- at</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> least 4G, quite possibly 8G if there's copying involved</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> see https://lists.debian.org/debian-med/2021/10/msg00069.html</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">--- a/test/fastq-loader/test-id2name.cpp</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/test/fastq-loader/test-id2name.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -136,6 +136,7 @@</span> FIXTURE_TEST_CASE ( AddRealloc, Id2name_</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> REQUIRE_EQ ( str, string ( m_res ) );</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+/*</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> FIXTURE_TEST_CASE ( MiltipleBuffers, Id2name_Fixture )</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> { // exceed a single KDataBuffer's size limit of 2**32-1 bytes</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> string str1 ( 0x7fffffff, '1');</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="p">@@ -147,6 +148,7 @@</span> FIXTURE_TEST_CASE ( MiltipleBuffers, Id2</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> REQUIRE_RC ( Id2Name_Get ( & m_self, 2, & m_res ) );</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> REQUIRE_EQ ( str2, string ( m_res ) );</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+*/</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> FIXTURE_TEST_CASE ( NameTooLong, Id2name_Fixture )</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> { // reject names exceeding KDataBuffer's size limit of 2**32-1 bytes</span></pre>
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