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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/0017a9cae9b4c8a53c28bab4b6315a47a4dfab8f">0017a9ca</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-10-19T15:07:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding more overrides on test reference data
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/d325eaec70fb4c2731c13cf566783455f54c54d9">d325eaec</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-10-19T15:09:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Restructured d/rules install+clean
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
<li class="file-stats">
<a href="#85ccdeeb03055211183e48520592d9a93592b330">
debian/source/lintian-overrides
</a>
</li>
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<h4>Changes:</h4>
<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/snakemake/-/compare/773483ab26bcb63386231bfe0ec85b723d0c28ec...d325eaec70fb4c2731c13cf566783455f54c54d9#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -40,18 +40,21 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">override_dh_auto_install:</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> dh_auto_install</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> find <span class="idiff left">.</span> -name '__pycache__' | xargs rm -R<span class="idiff right">f</span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> find <span class="idiff left">.</span> -name '*.pyc' | xargs <span class="idiff right">rm -Rf</span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> find debian -name '.gitignore' | xargs <span class="idiff left right">rm -Rf</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> find <span class="idiff left right">debian</span> -name '__pycache__' | xargs rm -R</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> find <span class="idiff left">debian</span> -name '*.pyc' | xargs <span class="idiff right">-r rm</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> find debian -name '.gitignore' | xargs <span class="idiff left right">-r rm</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"># the modules.sh is a workaround for #928826; putting it in PYBUILD_BEFORE_TEST_python3 doesn't work</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> . /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> find debian -name '.gitignore' | xargs -r rm</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> find . -name '__pycache__' | xargs rm -R</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> find . -name '*.pyc' | xargs -r rm</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> rm -f tests/test_filegraph/fg.pdf</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> rm -f tests/test_filegraph/fg.dot</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> rm -rf tests/test_github_issue413/.snakemake</span>
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<a href="https://salsa.debian.org/med-team/snakemake/-/compare/773483ab26bcb63386231bfe0ec85b723d0c28ec...d325eaec70fb4c2731c13cf566783455f54c54d9#85ccdeeb03055211183e48520592d9a93592b330"><strong>debian/source/lintian-overrides</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext"># This is just pure test data we need to compare with</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">snakemake source: source-is-missing tests/test_report/expected-results/report.html</span>
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2
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">snakemake source: source-is-missing tests/test_report/expected-results/report.html line length is *</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">snakemake source: source-is-missing tests/test_module_report/expected-results/report.html</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">snakemake source: mismatched-override source-is-missing tests/test_report/expected-results/report.html line length is *</span></pre>
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