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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ugene">Debian Med / ugene</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/e4ea763ebe055f2bdc4de5f00ef7ee5294480667">e4ea763e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T09:14:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/ed03c0184bdcccf8c481ff811b5f1f174848e0d0">ed03c018</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T09:15:14+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/00a81f929381966118b47c4b09fb901fbe14cf2b">00a81f92</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T09:15:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 40.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/51bb0a9d164c9c9da146e7d8b1052a83a0891fa5">51bb0a9d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T09:15:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/40.1+dfsg'
Update to upstream version '40.1+dfsg'
with Debian dir 629e72b7d0950d4f43e6e4fc6328fdc81f1a0348</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/2b86f78ded320967188aa7499e66aa92907636e5">2b86f78d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T09:15:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.6.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/920b2260554868f75fe2a2a65e262b4e11b1cd97">920b2260</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T09:15:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/6083bdee0cc9ad895ea356d0a4a9a6ffe89e73eb">6083bdee</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T11:35:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/5dbbb59e00d9316d8178143c53c657756c10b55d">5dbbb59e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T11:40:02+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Move TODO to separate file since it is just runtime dependency of a package that's in non-free anyway
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/1377d0ea91b23296b78a266c8986573829bc1476">1377d0ea</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T11:42:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Take over changelog entry of 34.0+dfsg-2 which was lacking in Git
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/d4b8ca0a1b5feb4f6ad351d803c732c5e7b154ca">d4b8ca0a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T12:55:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not try to install usr/share/applications which is not provided any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/16ac29d38145d0c017fab57f776d1be03f186d96">16ac29d3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-19T13:45:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/-/commit/8ebe3e854311e9b9c0b3570778a79dd962f1a79f">8ebe3e85</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-10-20T09:05:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enable uscan to create a sensible download name
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#01a718df87a96135eb956401504e555421dc5a3d">
.clang-format
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<li class="file-stats">
<a href="#7f9004ad0df1b6391abc998d9a153f9e763cbdd7">
<span class="new-file">
+
.github/CODEOWNERS
</span>
</a>
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<li class="file-stats">
<a href="#4123588cdef112aa874bf52a300e9ed01db3ccd2">
<span class="new-file">
+
.github/FUNDING.yml
</span>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#f97b9420c95a977bdc39d38e43b5ffcd68eb7c1b">
LICENSE.3rd_party.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#cd089ae45ce870c45e434019e8f1ed4f066cd425">
<span class="new-file">
+
_config.yml
</span>
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</li>
<li class="file-stats">
<a href="#6c90ce05452d78992b7403017c4ee918ca66b892">
data/cmdline/find-orfs.uwl
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<li class="file-stats">
<a href="#e3a127d8773da74e45261e497e79e6abc2119327">
<span class="new-file">
+
data/cmdline/hmm3-search.uwl
</span>
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</li>
<li class="file-stats">
<a href="#048671b327a35cd29fa9f04636a0199ea039759b">
<span class="new-file">
+
data/samples/Sanger/alignment.ugenedb
</span>
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<li class="file-stats">
<a href="#0147310eb25466d58e2cb71548e34fb7bcc49b56">
data/translations.txt
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<li class="file-stats">
<a href="#5768657270e3c6ad4730e23c1d54b3203d3c816f">
data/workflow_samples/Sanger sequencing/trim-and-align.uwl
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<li class="file-stats">
<a href="#b50f9bc01f3f17d800021360f09369c601ffcd26">
data/workflow_samples/Scenarios/translate_seq_and_compl.uwl
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<li class="file-stats">
<a href="#3cae5c71d7760172ded10a3dfe7a99f5f0c37bdf">
data/workflow_samples/Transcriptomics/SearchTFBS.uwl
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</li>
<li class="file-stats">
<a href="#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
<span class="new-file">
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debian/TODO
</span>
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8c1c3b87a3608944893f2c2c2ea4fa4c3806f8b3">
<span class="deleted-file">
−
debian/patches/fix_desktop_file.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
debian/patches/hardening.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#d185b62d54557160e7ddc743405a9cec66dcaa96">
debian/patches/use_debian_sqlite.patch
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<li class="file-stats">
<a href="#781e029ffb9eeebcc9f5b6be5943136152599f9c">
debian/ugene.install
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<li class="file-stats">
<a href="#0b0bc73f3732038f9b84063ce13bdfb0570ad9bb">
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docs/_config.yml
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<li class="file-stats">
<a href="#0b3e33619677413fe8f879987c9e0357046fe604">
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docs/index.md
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<li class="file-stats">
<a href="#9437ee8699d328917563b68c5ef6aaf7fbcdf1d0">
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etc/script/linux/build.sh
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<li class="file-stats">
<a href="#cc4a2166260007e8f3c622dc6eacb79df9591c77">
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etc/script/linux/copy_qt_files_to_ugene.sh
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<li class="file-stats">
<a href="#088a673e4007ffc38405a7587af42e8d23f47531">
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etc/script/linux/dump_syms
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<li class="file-stats">
<a href="#6ee8f6a30c19edb9dfc7b9fc082c6f79baffe450">
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etc/script/linux/initialize_displays.sh
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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