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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/3058f9c0977434f496839af9f69b31679e810416">3058f9c0</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-10-20T12:31:43+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Get tests passing
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<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/252462db81e6746ddc62cb15f9f22e5110a37778">252462db</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-10-20T12:35:27+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Interim changelog entry
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
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<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/snakemake/-/compare/7b2f99ac2dcf4b862d3c43b727ee9de7c678c563...252462db81e6746ddc62cb15f9f22e5110a37778#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">snakemake (6.9.1+dfsg1-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * d/t/control:</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> + Comment another instance of snakemake-doc</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> + Add python3-requests-mock and python3-jinja2 to test deps</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * d/t/run-unit-tests:</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> + Exclude couple of tests (similar as build time)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * d/copyright, d/rules, d/connection_pool.py:</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> + Hack around to install connection_pool.py as file, and use</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> the same</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Wed, 20 Oct 2021 12:31:52 +0530</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">snakemake (6.9.1+dfsg1-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> * Team upload.</span>
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<li id="83223a554d33ba7e1888274ff8ac43adb8147ba0">
<a href="https://salsa.debian.org/med-team/snakemake/-/compare/7b2f99ac2dcf4b862d3c43b727ee9de7c678c563...252462db81e6746ddc62cb15f9f22e5110a37778#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,5 +13,6 @@ Depends: snakemake,</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> python3-pandas,</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> python3-pytest,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> python3-requests-mock,</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> python3-jinja2,</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> stress</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/snakemake/-/compare/7b2f99ac2dcf4b862d3c43b727ee9de7c678c563...252462db81e6746ddc62cb15f9f22e5110a37778#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,4 +21,4 @@ export HOME="${AUTOPKGTEST_TMP}"</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell"><span class="nb" style="color: #0086b3;">.</span> /etc/profile.d/modules.sh</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#See debian/rules for why these are excluded</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell">python3 <span class="nt" style="color: #000080;">-m</span> pytest <span class="nt" style="color: #000080;">-v</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">ROOT</span><span class="k" style="font-weight: 600;">}</span>/tests/test<span class="k" style="font-weight: 600;">*</span>.py <span class="nt" style="color: #000080;">-k</span> <span class="s1" style="color: #d14;">'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_ancient and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_github_issue1062 and not test_env_modules and not test_modules_meta_wrapper and not test_tes'</span></span></pre>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell">python3 <span class="nt" style="color: #000080;">-m</span> pytest <span class="nt" style="color: #000080;">-v</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">ROOT</span><span class="k" style="font-weight: 600;">}</span>/tests/test<span class="k" style="font-weight: 600;">*</span>.py <span class="nt" style="color: #000080;">-k</span> <span class="s1" style="color: #d14;">'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_ancient and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_github_issue1062 and not test_env_modules and not test_modules_meta_wrapper and not test_tes<span class="idiff left right"> and not test_metadata_migration</span>'</span></span></pre>
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