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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/assembly-stats">Debian Med / assembly-stats</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/assembly-stats/-/commit/f17fb8b611b07cdbdf92866e920a45b96c1fd912">f17fb8b6</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-10-31T01:33:19+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add patch to fix FTBFS with gcc-11 (Closes: #997122)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/assembly-stats/-/commit/c5e1d6842b8fd28dffb6526a0ff490e0b8ad63b6">c5e1d684</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-10-31T01:33:19+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/u/metadata
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/assembly-stats/-/commit/b6b9a1c8a3620afa298157f31bde823f6d7b0c3b">b6b9a1c8</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-10-31T01:33:19+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#e99a270af7928fb70e6d100d4777aeb521509966">
debian/patches/add-debug-flag.patch
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</li>
<li class="file-stats">
<a href="#f38d99f8398b7290799cca649a21e6f07a117391">
<span class="new-file">
+
debian/patches/gcc11.patch
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</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/a90ffd4bbed0d7f59aec5a0b5f76c15c315d12c7...b6b9a1c8a3620afa298157f31bde823f6d7b0c3b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">assembly-stats (1.0.1+ds-5) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add patch to fix FTBFS with gcc-11 (Closes: #997122)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Update d/u/metadata</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sun, 31 Oct 2021 01:26:55 +0530</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">assembly-stats (1.0.1+ds-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> [ Steffen Moeller ]</span>
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<li id="e99a270af7928fb70e6d100d4777aeb521509966">
<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/a90ffd4bbed0d7f59aec5a0b5f76c15c315d12c7...b6b9a1c8a3620afa298157f31bde823f6d7b0c3b#e99a270af7928fb70e6d100d4777aeb521509966"><strong>debian/patches/add-debug-flag.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Do not take address of rvalue, rather simply append value into ostringstream and convert to string with str()</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <nilesh@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997122</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2021-10-31</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/CMakeLists.txt</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/CMakeLists.txt</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="p">@@ -1,7 +1,7 @@</span></span>
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<li id="f38d99f8398b7290799cca649a21e6f07a117391">
<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/a90ffd4bbed0d7f59aec5a0b5f76c15c315d12c7...b6b9a1c8a3620afa298157f31bde823f6d7b0c3b#f38d99f8398b7290799cca649a21e6f07a117391"><strong>debian/patches/gcc11.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/fastq_unittest.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/fastq_unittest.cpp</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -50,7 +50,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> while (fq.fillFromFile(inStream))</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> {</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> counter++;</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- string expectedName = static_cast<ostringstream*>( &(ostringstream() << counter) )->str();</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ostringstream ret_ostream;</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ret_ostream << counter;</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ string expectedName(ret_ostream.str());</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> EXPECT_EQ(0, fq.name().compare(expectedName));</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> EXPECT_EQ(0, fq.seq().compare("ACGT"));</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> }</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/fasta_unittest.cpp</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/fasta_unittest.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -94,7 +94,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> while (fa.fillFromFile(inStream))</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> counter++;</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- string expectedName = static_cast<ostringstream*>( &(ostringstream() << counter) )->str();</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ostringstream ret_ostream;</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ret_ostream << counter;</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ string expectedName(ret_ostream.str());</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> EXPECT_EQ(0, fa.name().compare(expectedName));</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> EXPECT_EQ(0, fa.seq().compare("ACGT"));</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> }</span></pre>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use_debian_packages_gtest.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">do-not-test-forcefully.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">add-debug-flag.patch</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">gcc11.patch</span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/a90ffd4bbed0d7f59aec5a0b5f76c15c315d12c7...b6b9a1c8a3620afa298157f31bde823f6d7b0c3b#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">---</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Archive: GitHub</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Bug-Database: https://github.com/sanger-pathogens/assembly-stats/issues</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Bug-Submit: https://github.com/sanger-pathogens/assembly-stats/issues/new</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Changelog: https://github.com/sanger-pathogens/assembly-stats/tags</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Repository: https://github.com/sanger-pathogens/assembly-stats.git</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Repository-Browse: https://github.com/sanger-pathogens/assembly-stats</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Registry:</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> Entry: assembly-stats</span></pre>
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