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<h3>
Nilesh Patra pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/stacks">Debian Med / stacks</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/stacks/-/commit/cfc9f125675572f6a33680f175de6b736a5bd3e0">cfc9f125</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-11-02T00:07:48+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.60+dfsg</pre>
</li>
</ul>
<h4>19 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#d5b4de16d947214ec306bd57bed1bd23a939b5f9">
Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#f80f154b64490a485c4418bd70f94184f6336dce">
scripts/denovo_map.pl
</a>
</li>
<li class="file-stats">
<a href="#bd376c19f31cf00993d47d8ef50b7d4979ba6183">
scripts/ref_map.pl
</a>
</li>
<li class="file-stats">
<a href="#0c4ded025684d2dd954d9125d5b5a1e62f34a876">
scripts/stacks-integrate-alignments
</a>
</li>
<li class="file-stats">
<a href="#0353c9e2b7196695bab181ee0d870d59a71bd70e">
src/PopSum.cc
</a>
</li>
<li class="file-stats">
<a href="#085c9faf5991f957cd23acef90e998eb35f3d050">
src/PopSum.h
</a>
</li>
<li class="file-stats">
<a href="#119d50f2f2d1e3f64b65bbd89f3cafcfb13ca0d4">
src/Seq.h
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</li>
<li class="file-stats">
<a href="#371b5630185305ae08eb7219997f9e12983e4609">
<span class="new-file">
+
src/bootstrap.cc
</span>
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<li class="file-stats">
<a href="#64481a754ff623218e6aa7a122ae4ccf8221906f">
src/bootstrap.h
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<li class="file-stats">
<a href="#85c0ee6f77dd1ab892cf45bfd301d678f6ebec1f">
src/clean.cc
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<li class="file-stats">
<a href="#2f7325ed14b982f91f8a457bac8ca0389322f5a3">
src/clone_filter.cc
</a>
</li>
<li class="file-stats">
<a href="#03f856e8b44c3c125706ba7e7a8c138a914e7063">
src/constants.h
</a>
</li>
<li class="file-stats">
<a href="#9b5186210cef02bd7aa4ac577214b1ba3b2fa6a8">
src/cstacks.cc
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<li class="file-stats">
<a href="#82f890d85e8478e8a6e7412a9b0ca39d938b5cb3">
src/export_formats.cc
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</li>
<li class="file-stats">
<a href="#0ee47e0beb7c5d562b18b35fe4e0e9c1f80e1aca">
src/export_formats.h
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</li>
<li class="file-stats">
<a href="#4db99ba54e457148effcc480211bd572024a233f">
src/gstacks.cc
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</li>
<li class="file-stats">
<a href="#75b55eaf50ac7d1697ede911a5d399860273961f">
src/ordered.h
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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