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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/pyranges">Debian Med / pyranges</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/pyranges/-/commit/0a49bbc1c524bd6b79a895847ad477ce9b85e6b6">0a49bbc1</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-11-03T12:38:48+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">[skip ci] Add patch to fix tests
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#25531c64c6f4e048e10f908d6b61f9a6a74198b4">
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debian/patches/fix_dtype.patch
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+
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/pyranges/-/commit/0a49bbc1c524bd6b79a895847ad477ce9b85e6b6#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,8 +6,9 @@ pyranges (0.0.111+ds-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> [ Nilesh Patra ]</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * New upstream version 0.0.111+ds</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * Run cme</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Add patch to fix tests</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> <span class="idiff left">Tue</span>, 0<span class="idiff">2</span> Nov 2021 <span class="idiff">23:28:55</span> +0<span class="idiff right">53</span>0</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> <span class="idiff left">Wed</span>, 0<span class="idiff">3</span> Nov 2021 <span class="idiff">07:06:31</span> +0<span class="idiff right">00</span>0</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">pyranges (0.0.85+ds-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<li id="25531c64c6f4e048e10f908d6b61f9a6a74198b4">
<a href="https://salsa.debian.org/med-team/pyranges/-/commit/0a49bbc1c524bd6b79a895847ad477ce9b85e6b6#25531c64c6f4e048e10f908d6b61f9a6a74198b4"><strong>debian/patches/fix_dtype.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Explicitly case variable to category dtype</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <nilesh@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2021-11-03</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/pyranges/methods/concat.py</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/pyranges/methods/concat.py</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -43,7 +43,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> if any(strand_info) and not all(strand_info):</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> new_res = {}</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> for k, v in res.items():</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- v.loc[:, "Strand"] = v.Strand.cat.add_categories(["."])</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ type_v = v.Strand.astype('category')</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ v.loc[:, "Strand"] = type_v.cat.add_categories(["."])</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> new_res[k] = v.assign(Strand=v.Strand.fillna("."))</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> res = pr.PyRanges(new_res)</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> res.Strand = res.Strand</span></pre>
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<a href="https://salsa.debian.org/med-team/pyranges/-/commit/0a49bbc1c524bd6b79a895847ad477ce9b85e6b6#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fix_dtype.patch</span></pre>
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