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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/arb">Debian Med / arb</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/arb/-/commit/a0a2f008b40f85ba0ba71a2ce25ce9db72b866d7">a0a2f008</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-11-06T03:02:12+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add patch to fix FTBFS with new glibc, add flags to use libtirpc-dev (Closes: #998237)
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<strong><a href="https://salsa.debian.org/med-team/arb/-/commit/dbdfc95192d3b6f2bf98d19b22f47f63947d4053">dbdfc951</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-11-06T03:02:12+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add B-D on libtirpc-dev
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<strong><a href="https://salsa.debian.org/med-team/arb/-/commit/d4605223d282a712a0905feef4cc962e7d033ea8">d4605223</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-11-06T03:09:19+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#aef0d8afd82cf6d88c836fee4730d40bc5133043">
<span class="new-file">
+
debian/patches/100_use_tirpc.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/arb/-/compare/bf398e6966f7579393bc8cbc845a88b088832165...d4605223d282a712a0905feef4cc962e7d033ea8#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">arb (6.0.6-5) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">arb (6.0.6-5) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> [ Jelmer Vernooij ]</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Trim trailing whitespace.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Use secure copyright file specification URI.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,7 +16,16 @@ arb (6.0.6-5) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> [ Elmar Pruesse ]</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> * Fix stripping of static libs</span>
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<td class="new_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sun, 31 Mar 2019 21:53:19 +0200</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> [ Steffen Möller ]</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * Update metadata with ref to conda</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> * Update metadata - updated bio.tools ref to lowercase</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> [ Nilesh Patra ]</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> * Add patch to fix FTBFS with new glibc, add flags to</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> use libtirpc-dev (Closes: #998237)</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> * Add B-D on libtirpc-dev</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sat, 06 Nov 2021 02:25:36 +0530</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">arb (6.0.6-4) unstable; urgency=medium</span>
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/arb/-/compare/bf398e6966f7579393bc8cbc845a88b088832165...d4605223d282a712a0905feef4cc962e7d033ea8#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,6 +16,7 @@ Build-Depends: chrpath,</td>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> libmotif-dev,</span>
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17
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> libpng-dev,</span>
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18
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libtiff-dev,</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> libtirpc-dev,</span>
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19
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> libxaw7-dev,</span>
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20
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> libxml2-utils,</span>
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21
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> libxpm-dev,</span>
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<a href="https://salsa.debian.org/med-team/arb/-/compare/bf398e6966f7579393bc8cbc845a88b088832165...d4605223d282a712a0905feef4cc962e7d033ea8#aef0d8afd82cf6d88c836fee4730d40bc5133043"><strong>debian/patches/100_use_tirpc.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Append relevant flags to cxxflags and lfags to build with tirpc</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <nilesh@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2021-11-06</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -523,7 +523,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> # add CFLAGS + CPPFLAGS from environment for DEBIAN build</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> ifeq ($(DEBIAN),1)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> cflags := $(CFLAGS) $(cflags)</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- cxxflags += $(CPPFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ cxxflags += $(CPPFLAGS) -I/usr/include/tirpc</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> endif</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> ifeq ('$(USE_GCC_47_OR_HIGHER)','yes')</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -563,7 +563,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> # make -j9 "TIMED_TARGET=perl" clean_timed_target | grep '^\[' | sort</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> CORE_LIB=-lCORE</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-ARBDB_LIB=-lARBDB $(CORE_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ARBDB_LIB=-lARBDB $(CORE_LIB) -ltirpc</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> LIBS = $(ARBDB_LIB) $(SYSLIBS)</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> GUI_LIBS_PREFIX:=</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/TEMPLATES/cxxforward.h</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/TEMPLATES/cxxforward.h</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="p">@@ -28,7 +28,11 @@</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> # define ARB_ENABLE_Cxx11_FEATURES</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> // # define ARB_ENABLE_Cxx14_FEATURES // not needed yet</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> # else</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# if (__cplusplus == 201703L)</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# define ARB_ENABLE_Cxx11_FEATURES</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# else</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> # error Unknown C++ standard defined in __cplusplus</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# endif</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> # endif</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> # endif</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> # endif</span></pre>
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<a href="https://salsa.debian.org/med-team/arb/-/compare/bf398e6966f7579393bc8cbc845a88b088832165...d4605223d282a712a0905feef4cc962e7d033ea8#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,3 +7,4 @@</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">70_skip_compler_version_check.patch</span>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">80_enable_new_dtags.patch</span>
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<td class="old_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">90_do_not_create_MAFFT_symlinks.patch</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">100_use_tirpc.patch</span></pre>
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