<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/bebf48efcb178901a64e222bf5bf7b47ebfc26be">bebf48ef</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T15:07:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "New upstream version 2.11.1"
This reverts commit bed9cf5d3f8c700ff467442c3c400c1b391b824e.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/815f6cb378abb884e7b80b9bf2e3002aa70994fc">815f6cb3</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T15:39:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removing all jar files and refreshing d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/1001b9ef5b25fb3a686eb2b41806765694786a7c">1001b9ef</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T15:39:38+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.6.3+dfsg1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/32716d6cda6ca03e01e7facb28d18cb876643d46">32716d6c</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T15:42:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.6.3+dfsg1'
Update to upstream version '2.6.3+dfsg1'
with Debian dir e5a897fc6021b7ea07e4d2a97e63fc74628c5151</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/cb51d805b43964a9b9201d6854c7825efb67b9cc">cb51d805</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T15:44:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using my debian.org email address
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/27c9eb7166c57bda2c1c3cc1fc2cf945f4efa77c">27c9eb71</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T15:55:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using the Debian-packaged libgoby-io-java
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/15d8407a866a27fd3099dfbaab2a3b22f4ea3693">15d8407a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T20:32:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding jars in the classpath for the tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/73311327155f5d16ce1337572ed7e0934bd6032e">73311327</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T20:52:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Indicating the coordinates of Debian-packaged dependencies and omitting modules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/2f22d7f48db3217bf5486f56226de4bf2642e1bf">2f22d7f4</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T20:54:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Omitting three tests related to goby as they rely on too old data files
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/38e7577defe97b0c40a7c6b15441b68f1d0465e1">38e7577d</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T20:55:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/e10a28b9c57cb52a5eb35396ba54f66fe557a4bf">e10a28b9</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T20:57:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/d991be5b39f7a026d16cda788d0c4185ca307504">d991be5b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T20:57:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Wrap long lines in changelog entries: 2.6.3+dfsg1-1.
Changes-By: lintian-brush
Fixes: lintian: debian-changelog-line-too-long
See-also: https://lintian.debian.org/tags/debian-changelog-line-too-long.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/8704bce2b84ce82183fd388a6c8e8d1dae17faf9">8704bce2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:03:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Preparing to repack without the non-free icon theme
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/1500178bd803d8c62768b2836493ae8fbd640f67">1500178b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:04:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.6.3+dfsg2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/2a24bee229c96b649b931560cb162c12144ea024">2a24bee2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:06:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.6.3+dfsg2'
Update to upstream version '2.6.3+dfsg2'
with Debian dir 20584fc5a299124f8f032a035a404b3a47f4183f</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/06fd49d3f32015ecaafe33705cb77cc7dd37bc14">06fd49d3</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:10:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using home-made icons to replace the non-free ones
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/c5c267bf2af1d7f4a88b22595b36d32e63a678d9">c5c267bf</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:11:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">igv is now DFSG-free
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/0680dcaf387ad38e040fad50165fa187b0f6668f">0680dcaf</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:11:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Raising Standards version to 4.6.0 (no change)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/2779643af12de2cd4dd47d74726099b7769a246a">2779643a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:13:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding a desktop entry and an icon
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/56e30cc69215a8bbc7b8cd1e0c730deecb6bc991">56e30cc6</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:20:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Generating the icons in d/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/d1749d7de91c7de734456e07b21a1bfe5d480913">d1749d7d</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:25:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/c510c042c2d65e483abdd27782d9b1d026039838">c510c042</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:26:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/07cd34671051c89b2e31a082157a53d023804ccc">07cd3467</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-06T21:51:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Reordering dependencies and classpath elements
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
debian/clean
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#62ba939ad24ae980b1c6c14601b3f41f1637b096">
<span class="new-file">
+
debian/icons/Home24.svg
</span>
</a>
</li>
<li class="file-stats">
<a href="#13e1e5a561f04dff3e0c2a381535bf0ddfa2c16f">
<span class="new-file">
+
debian/icons/Refresh24.svg
</span>
</a>
</li>
<li class="file-stats">
<a href="#4a9ebe817e9dc481d6bf2e805fcaaaf22cb0a6be">
<span class="new-file">
+
debian/icons/Stop16.svg
</span>
</a>
</li>
<li class="file-stats">
<a href="#c5cdf8b6b8a7348a5a860b65ec5021ce99d8f884">
<span class="new-file">
+
debian/icons/ZoomIn24.svg
</span>
</a>
</li>
<li class="file-stats">
<a href="#26e8ebcda238bcd8b91c985fb06bd71b7a23bb88">
<span class="new-file">
+
debian/icons/ZoomOut24.svg
</span>
</a>
</li>
<li class="file-stats">
<a href="#067adc1a38621f1b91a42fe06ddc880c8dc9861f">
<span class="new-file">
+
debian/igv.desktop
</span>
</a>
</li>
<li class="file-stats">
<a href="#945cf4db04b2b988703a5a3d7635c8ba5f8fc856">
<span class="new-file">
+
debian/igv.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#049056f90e633dca390106da65d2f80e8a960ed3">
debian/igv.manifest
</a>
</li>
<li class="file-stats">
<a href="#2f3af890dc1e621ca8d8e2d08b3fd343f2df36ce">
<span class="new-file">
+
debian/patches/goby_package.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#f9271eab4da87b925b1f65845b9ce74b6c675af3">
debian/patches/gradle_dependencies.patch
</a>
</li>
<li class="file-stats">
<a href="#f11af076ef5b585c32b9737349cdc89bdb5ac0a0">
debian/patches/handle_old_htsjdk.patch
</a>
</li>
<li class="file-stats">
<a href="#c6986a751f9c9827db0a0e0dd06df9b787b6026e">
<span class="new-file">
+
debian/patches/omit_out_of_date_goby_tests.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#158c9a83bf6361eb3dab802707c2ce0bb9662494">
debian/patches/skip_tests_network.patch
</a>
</li>
<li class="file-stats">
<a href="#be3a13aeb161c9f255cec474018169e8cab1f5b0">
<span class="new-file">
+
debian/patches/using_home_made_icons.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#ec27dae6e852c099bfcae8de5204d286bb6f04ff">
<span class="deleted-file">
−
gradle/wrapper/gradle-wrapper.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#fbe448ebfc3eb2d4e308f6b8b043666f5b57235e">
<span class="deleted-file">
−
gradle/wrapper/gradle-wrapper.properties
</span>
</a>
</li>
<li class="file-stats">
<a href="#ef54b3754d35455eba7cd94a22d18ca3d3704bc9">
<span class="deleted-file">
−
lib/AbsoluteLayout.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#0af6b650518122051dc5a1387331317006977be1">
<span class="deleted-file">
−
lib/apache_license.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#af215dda44c4f59b386cd07980871055895740b7">
<span class="deleted-file">
−
lib/goby-io-igv-1.1.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#ddc8cf35d1f13667df623a146674bed9127cbbfd">
<span class="deleted-file">
−
lib/jide-common-3.7.3.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#2925fa853b3d8c29f20f65db4d92f7396842773c">
<span class="deleted-file">
−
lib_build/appbundler-1.0.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#e6472bf33152f34ceeae11085085b54e4c9d6432">
<span class="deleted-file">
−
lib_build/proguard.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#45df4f19f016fef88759437d57468c5b9e426ab8">
<span class="deleted-file">
−
lib_build/proguard_full_client.cfg
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/igv/-/compare/c12c100959178d2391f62f6bbf068f9ac1d9f826...07cd34671051c89b2e31a082157a53d023804ccc">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>