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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/505b894c81ad8553bb616073371c45dca9491856">505b894c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-11-07T17:11:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.13.2+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#0333192f2ef6a6a3adebca982faa7d5d19f53ebf">
Analysis/DifferentialExpression/prep_n_run_GOplot.pl
→
Analysis/DifferentialExpression/deprecated/prep_n_run_GOplot.pl
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</li>
<li class="file-stats">
<a href="#2cd3d64d6f04dfa38cd2c19d5eb255a42b622d2b">
Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl
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<li class="file-stats">
<a href="#9d7d66f338f0fe86ecd2ae542ce0703b0e1e5aaa">
Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
</a>
</li>
<li class="file-stats">
<a href="#0c138990846c52c002f77f524cf63e8385cad532">
Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
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<li class="file-stats">
<a href="#15d5494ca003acaf839821fbf5bda2c46f070ed9">
Analysis/SuperTranscripts/pylib/Node_alignment.py
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<li class="file-stats">
<a href="#0e3a6b7913578d52b50329e6de6dffd7f5793de2">
Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
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<li class="file-stats">
<a href="#36238d5fa26683466193f61b8d724919bec12681">
Changelog.txt
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<li class="file-stats">
<a href="#82c7e1851025e6f016d3ab67bf625f9508e7f944">
Chrysalis/CMakeLists.txt
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<li class="file-stats">
<a href="#7a26337033c38b951814a4884a5fc51b2f10b34b">
Chrysalis/analysis/QuantifyGraph.cc
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<li class="file-stats">
<a href="#944fc0660cf2284778015de0a454475d13bbedd5">
Chrysalis/analysis/ReadsToTranscripts.cc
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<li class="file-stats">
<a href="#c17162afe197b4cd68c18a18e62053cfcdce9b54">
Chrysalis/analysis/sequenceUtil.cc
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<li class="file-stats">
<a href="#0a4a56b27250d738412bcc6c15e35c7e2a6299ef">
Chrysalis/analysis/sequenceUtil.h
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<li class="file-stats">
<a href="#56cd058343dc500d70fb6c2c4aac98dc5da7cbe5">
Docker/Dockerfile
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<li class="file-stats">
<a href="#bbb101bc2f90c8750e858f6e53300be082686b61">
Docker/VERSION.txt
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<li class="file-stats">
<a href="#f0c5a1057e0084b29ddc9effb66d4757d272f15f">
Docker/cleanMe.sh
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<li class="file-stats">
<a href="#197287102e4d5e3f7d6c5b989159bfe800eaf95f">
Docker/run_ext_test_docker.sh
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<li class="file-stats">
<a href="#ccc9d8dbae44cac5f314fa3910416440beea4a13">
Docker/run_ext_test_singularity.sh
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<li class="file-stats">
<a href="#8c7579df262129b95aed9b5ac0c4db21126272b3">
Docker/run_test_docker.sh
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<li class="file-stats">
<a href="#fe1f3f0432df49e752b342651a4544704be40e18">
Trinity
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<li class="file-stats">
<a href="#ff5017cea8787879188c47883b9afb9b0c01d47b">
<span class="deleted-file">
−
bioconda_recipe/trinity/2.1.1/build.sh
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<li class="file-stats">
<a href="#dd4cf525462273c265cdfc9ea3ab0af45268e415">
<span class="deleted-file">
−
bioconda_recipe/trinity/2.1.1/meta.yaml
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<li class="file-stats">
<a href="#0c392da400343a3d1f0476819b8c6609d6e2f712">
<span class="deleted-file">
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bioconda_recipe/trinity/2.2.0/Build.PL
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<a href="#e141b41ac8536afb6cce72891480b1a37bfeb44c">
<span class="deleted-file">
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bioconda_recipe/trinity/2.2.0/build.sh
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<a href="#7af36e3eec38fcab40a9b2013fddeee7cf109698">
<span class="deleted-file">
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bioconda_recipe/trinity/2.2.0/makefile.clean.patch
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<a href="#bdb88f7937e8385cf594d3a760203179df3413dc">
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bioconda_recipe/trinity/2.2.0/meta.yaml
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<a href="#6c6638f47562b91a01488dae5dbae6f0d07ee221">
<span class="deleted-file">
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bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch
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<a href="#334917ecef0ce373ca74bc0b989241635a50ee89">
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bioconda_recipe/trinity/2.3.2/Build.PL
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<a href="#988b76ae8fdab56d8bf069bb46891f5e500b3eea">
<span class="deleted-file">
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bioconda_recipe/trinity/2.3.2/build.sh
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<a href="#1c28b77637125b38bcb150d4108c6c882f0a1c0e">
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bioconda_recipe/trinity/2.3.2/makefile.clean.patch
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<li class="file-stats">
<a href="#d20995e05295e2913c70cc2f1d3e3ccf4da17a9c">
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bioconda_recipe/trinity/2.3.2/meta.yaml
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<h5>The diff was not included because it is too large.</h5>
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