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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/mothur">Debian Med / mothur</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/-/commit/11403798fec1fd51fa34ed4d9a937b133d2de337">11403798</a></strong>
<div>
<span>by Hamid Nassiby</span>
<i>at 2021-11-08T18:18:08+03:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert Fix linking
</pre>
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<strong><a href="https://salsa.debian.org/med-team/mothur/-/commit/4195a5525d5e9f787b301fda48cc7a5b06c969bd">4195a552</a></strong>
<div>
<span>by Hamid Nassiby</span>
<i>at 2021-11-08T18:37:29+03:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix linking
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
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<li class="file-stats">
<a href="#ce8311c42636988878839c9b634efc3ceb190d7e">
debian/patches/c++14.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
<a href="https://salsa.debian.org/med-team/mothur/-/compare/ff8928540e0d720b8a08ee4227c1bbadc2c1e733...4195a5525d5e9f787b301fda48cc7a5b06c969bd#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c"><strong>Makefile</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -118,8 +118,8 @@ endif</td>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="make"> <span class="nv" style="color: #008080;">OBJECTS</span><span class="o" style="font-weight: 600;">=</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">patsubst</span> %.cpp,%.o,<span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">wildcard</span> <span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">addsuffix</span> <span class="k" style="font-weight: 600;">*</span>.cpp,<span class="nv" style="color: #008080;">$(subdirs)</span><span class="nf" style="color: #900; font-weight: 600;">)))</span></span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="make"> <span class="nv" style="color: #008080;">OBJECTS</span><span class="o" style="font-weight: 600;">+=</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">patsubst</span> %.c,%.o,<span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">wildcard</span> <span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">addsuffix</span> <span class="k" style="font-weight: 600;">*</span>.c,<span class="nv" style="color: #008080;">$(subdirs)</span><span class="nf" style="color: #900; font-weight: 600;">)))</span></span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="make"> <span class="nv" style="color: #008080;">OBJECTS</span><span class="o" style="font-weight: 600;">+=</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">patsubst</span> %.cpp,%.o,<span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">wildcard</span> <span class="k" style="font-weight: 600;">*</span>.cpp<span class="nf" style="color: #900; font-weight: 600;">))</span></span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="make"> <span class="nv" style="color: #008080;">OBJECTS</span><span class="o" style="font-weight: 600;">+=</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">patsubst</span> %.c,%.o,<span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">wildcard</span> <span class="k" style="font-weight: 600;">*</span>.c<span class="nf" style="color: #900; font-weight: 600;">))</span></span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="make"> <span class="nv" style="color: #008080;">OBJECTS</span><span class="o" style="font-weight: 600;">+=</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">patsubst</span> %.cpp,%.o,<span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">wildcard</span> <span class="nb" style="color: #0086b3;"><span class="idiff left">source</span></span><span class="idiff right">/</span><span class="k" style="font-weight: 600;">*</span>.cpp<span class="nf" style="color: #900; font-weight: 600;">))</span></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="make"> <span class="nv" style="color: #008080;">OBJECTS</span><span class="o" style="font-weight: 600;">+=</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">patsubst</span> %.c,%.o,<span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">wildcard</span> <span class="nb" style="color: #0086b3;"><span class="idiff left">source</span></span><span class="idiff right">/</span><span class="k" style="font-weight: 600;">*</span>.c<span class="nf" style="color: #900; font-weight: 600;">))</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="make"><span class="nl">mothur </span><span class="o" style="font-weight: 600;">:</span> <span class="nf" style="color: #900; font-weight: 600;">$(OBJECTS) uchime</span></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="make"> <span class="nv" style="color: #008080;">$(CXX)</span> <span class="nv" style="color: #008080;">$(LDFLAGS)</span> <span class="nv" style="color: #008080;">$(TARGET_ARCH)</span> <span class="nt" style="color: #000080;">-o</span> <span class="nv" style="color: #008080;">$@</span> <span class="nv" style="color: #008080;">$(OBJECTS)</span> <span class="nv" style="color: #008080;">$(LIBS)</span></span>
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<li id="ce8311c42636988878839c9b634efc3ceb190d7e">
<a href="https://salsa.debian.org/med-team/mothur/-/compare/ff8928540e0d720b8a08ee4227c1bbadc2c1e733...4195a5525d5e9f787b301fda48cc7a5b06c969bd#ce8311c42636988878839c9b634efc3ceb190d7e"><strong>debian/patches/c++14.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,14 +12,10 @@ Origin: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984243#33</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> LDFLAGS = -g</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> #</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="p">@@ -6,8 +6,8 @@</span> LDFLAGS = -g</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> #</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> OBJECTS=$(patsubst %.cpp,%.o,$(wildcard $(addsuffix *.cpp,$(subdirs))))</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> OBJECTS+=$(patsubst %.c,%.o,$(wildcard $(addsuffix *.c,$(subdirs))))</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- OBJECTS+=$(patsubst %.cpp,%.o,$(wildcard *.cpp))</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ OBJECTS+=$(patsubst %.cpp,%.o,$(wildcard source/*.cpp))</span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ OBJECTS+=$(patsubst %.c,%.o,$(wildcard source/*.c))</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -26,4 +26,4 @@</span> install : uchime</span>
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23
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> </span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> uchime : $(OBJECTS)</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"> $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)</span></pre>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> clean :</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> @rm -f $(OBJECTS)</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- </span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span> No newline at end of file</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ </span></span></pre>
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<a href="https://salsa.debian.org/med-team/mothur/-/compare/ff8928540e0d720b8a08ee4227c1bbadc2c1e733...4195a5525d5e9f787b301fda48cc7a5b06c969bd#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@</td>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">drop_sys_sysctl.h.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">gcc-11.patch</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">c++14.patch</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">fix_linking.patch</span></pre>
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