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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/discosnp">Debian Med / discosnp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/-/commit/662a6639052cfcc6bff792ae934c9eb58a7dc8e4">662a6639</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-11-09T17:40:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version (upstream has not properly tagged what was released as version 4.4.4 thus using epoch)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/-/commit/256f09c75704734c1aa7885eb036cbdf36887d94">256f09c7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-11-09T18:24:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/watch:
- do not report broken version 4.4.4
- create sensible download file name
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/-/commit/59edc4e46f02b686d4da0873455115a858d82b4e">59edc4e4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-11-09T18:24:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/-/commit/b6da7951c8822f86c9bd8abe9403b5f1ed15c642">b6da7951</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-11-09T18:24:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.4'
Update to upstream version '2.5.4'
with Debian dir 113d18c905e221ef2bb43b1d94b8a9b3b1990acd</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/-/commit/5e4c0dd5aa9d1fd1994cc4a7b0c4f17697e1dcce">5e4c0dd5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-11-09T20:26:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/-/commit/cd713984e270095aac4a20d7229ddab474929d60">cd713984</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-11-09T21:06:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Close bug and upload to unstable
</pre>
</li>
</ul>
<h4>23 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#4cb649179972f241270896d0ae791f0378714aee">
<span class="new-file">
+
RELEASE.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#bf2967f2e5d775c66983431a1a3d3a2edf5b7227">
debian/patches/path_to_readme_file_names.patch
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
debian/patches/spelling.patch
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#cb5f0914b158384fc97934cc8fd6cba4e00b7d81">
discoSnpRAD/README.md
</a>
</li>
<li class="file-stats">
<a href="#db843ee1aa7e62bf45356464a94f6f15cd7fbc69">
discoSnpRAD/run_discoSnpRad.sh
</a>
</li>
<li class="file-stats">
<a href="#23121249bf27c7ef52490e919e85c5dbebcffd20">
run_discoSnp++.sh
</a>
</li>
<li class="file-stats">
<a href="#c66012cb278e5661001c62b660bbcea5264c8aa5">
run_discoSnp++_ML.sh
</a>
</li>
<li class="file-stats">
<a href="#3225a21d723a3de3f28da985c1cca577237f5a46">
<span class="deleted-file">
−
run_discoSnp++_storagefile.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#11320d92a5a71c692f70f36e6f1b1bde98a6b990">
scripts/VCF_creator.py
</a>
</li>
<li class="file-stats">
<a href="#178341d1b541468568544f3634fdf0855173cda9">
scripts/k3000/K3000.py
</a>
</li>
<li class="file-stats">
<a href="#de4b367ffce68ae3ce4c8f4ba156edabdf512018">
scripts/k3000/K3000_common.py
</a>
</li>
<li class="file-stats">
<a href="#ccab98d61f126bc2cd4d3bb74b4beff40649bbe5">
<span class="deleted-file">
−
scripts/k3000/K3000_compacted_int_to_fa.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ffa821f7320dc0ff10d633dd622430f5126e533">
<span class="deleted-file">
−
scripts/k3000/K3000_compacted_paths_to_fa.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#7bbf21cfa6e98f1bc87d998cf5188b213c5e2974">
scripts/k3000/K3000_enhance_gfa.py
</a>
</li>
<li class="file-stats">
<a href="#8839bd182ba575544ba7d90ccb5e75e868dbad12">
<span class="new-file">
+
scripts/k3000/K3000_fact_haplotypes_to_localized_variant_ids.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#2509dfd35256dd3d895116ca2278c2ca0534c1c7">
<span class="new-file">
+
scripts/k3000/K3000_facts_to_fa.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#5c4a02f09e690f1638b0e91121f3b77745f4e0c6">
<span class="new-file">
+
scripts/k3000/K3000_facts_to_gfa.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#306130f919f171ef994e4144ada9196c3b13385f">
scripts/k3000/K3000_find_unitig_connected_pairs_of_facts.py
</a>
</li>
<li class="file-stats">
<a href="#8ab9255b25c347c3725734fcb145a0b05b1edd3b">
scripts/k3000/K3000_gfa_post_treatment.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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