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<h3>
Diane Trout pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-scanpy">Debian Med / python-scanpy</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/388748f0b6e0562548d179502605b5d7aa1dc433">388748f0</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-09T16:37:52-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.8.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/1a516aad3c50ce6ff969770d739a8ed197355a34">1a516aad</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-09T16:38:25-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.8.2'
Update to upstream version '1.8.2'
with Debian dir 36c8303a60ae8d7883ad671a386b86eeae3febec</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/d07f939e40c75ea9083646748ea9569b33786b9c">d07f939e</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:45:52-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream dropped this dependency
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/c793a1c0e995905c13c270e41b1d0d9544df8f90">c793a1c0</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:46:13-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Some test cases try to use the leiden and louvain clustering algoritms
Unfortunately I think scanpy really wants the vtaag louvain which
I think the developer removed in preference of their leiden method
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/c235d9d4cff076d5ad861ae39aa543e2ee7dc03a">c235d9d4</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:49:51-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">test_plot_rank_genes_groups_gene_symbols worked without internet
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/5e770b0f4c6e32b64bd0fbee23db3077aa731489">5e770b0f</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:50:30-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">compute methods were installed correctly into test environment
Also pybuild.testfiles doesn't seem to copy into subdirectories
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/bdb858c3587d5972171450ae5d6ab8855c996a0b">bdb858c3</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:51:22-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install conftest.py into pybuild test environment
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/988cea444e05140c3b23560cfdb6281ce690e7a1">988cea44</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:53:26-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Include more test data
This allows more tests to run without needing internet access.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/22bba973fa9965009453cede23e7e350f42e1188">22bba973</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:56:19-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update tests that depnded on louvain package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/6e83b16f9e0483b7f89a4ba149fdf6be1cdae88c">6e83b16f</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:56:40-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Disable some more tests that ran me out of memory
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/e0e87f208173065bf007beac5f9a3b6546f92724">e0e87f20</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T14:57:00-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Disable test_visium_default after asking upstream about it.
https://github.com/theislab/scanpy/issues/2048
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-scanpy/-/commit/9179e3fc88d0ab55912a2b4e6dd9e7dc1d484d83">9179e3fc</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2021-11-10T15:07:39-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Provide image comparison test cases better test data
There's some modest differences in plot layouts between upstreams test
enviornments and ours that cause slightly different layouts.
</pre>
</li>
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