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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/sepp">Debian Med / sepp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/06e3158edcbdc9dd453e847e2605095a4558557e">06e3158e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:22:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.5.1+really4.5.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/b677c7950077938c769606ad4971f0ee0fca0821">b677c795</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:22:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/4.5.1+really4.5.1+dfsg'
Update to upstream version '4.5.1+really4.5.1+dfsg'
with Debian dir 7e0ad92d8726e90022378f9c19d3af73960bead4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/5589222d7d0e6f0b76c7c42415b9308fac1d29c9">5589222d</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:23:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Correcting a wrong revert"
This reverts commit f1e861981aabdb46391a5ff71c14e0a75beac7a3.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/252c7e58b95e17ad0ea8c9f288bbd8efef76f893">252c7e58</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:24:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Refreshing patch"
This reverts commit 6cdef168b106499c97f4729dfb0712c2ffabdd03.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/625a07b15b08f2cf25a83fa5cdf86a21ce82a825">625a07b1</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:24:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Revert "tipp is now shipped in a different source package""
This reverts commit da8ea50f0805b1d96f8259099230325f0b90644d.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/b6398f1af201bfc700ad897c6930ad328e081330">b6398f1a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:24:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Revert "Refreshing patches, deleting 3 upstreamed ones""
This reverts commit 548f0a82a3d7a71b8557779986ce3c8fc94ebded.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/a5ccccb53db732cc071dfa23f410baf054ad52fb">a5ccccb5</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:24:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Revert "Using the Debian path of hmmbuild in the test testUPP""
This reverts commit b7059fd263b927859fd0dd02e4a2f9cab8bb48ec.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/a14f1ab16e21f5d6b75adca9967550a47bb755e7">a14f1ab1</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:24:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "Revert "Refreshing manpages of run-sepp.py and run_sepp.py""
This reverts commit 0b770f16b9374c8fae8360c8cf91b3283496cb00.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/d10b1518e7e42139190c8873ef2e55240359c2c4">d10b1518</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T11:34:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding sepp.maintscript to remove the config file of tipp
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/7f1fb9f10e1837fb1908c7c7b3bfc6260cc1e3d1">7f1fb9f1</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-09-30T13:53:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to experimental
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/13192d1607c1a4de135f72393584f6b6d1f9ea9d">13192d16</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-10-12T20:54:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Setting the package to be Architecture: all
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/d07616655ea2ff4f5edc71e9d53d71185f1e02f2">d0761665</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-10-12T20:54:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to experimental
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/e37e00fe11caf638df1b0c8e80976780aadab5e0">e37e00fe</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-16T20:42:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Setting the package as Architecture: any again
/bin/bash: ligne 1: q : commande introuvable
This reverts commit 13192d1607c1a4de135f72393584f6b6d1f9ea9d.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/ce7742129d0781d3794f070a36e4740cd9eadf25">ce774212</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-16T20:45:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/6e23e0926c222a87ce369952e31daaf1cc62c6d5">6e23e092</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-16T21:36:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#eff4cd4a1e08155d42c85e48787c9e4c288b8d02">
<span class="new-file">
+
.coveragerc
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#c42acb496cffcd06b599699e4ab23a959345a34f">
README.SEPP.md
</a>
</li>
<li class="file-stats">
<a href="#96eba0d32c6e009fd44d232fc6d9db4b379d1234">
<span class="deleted-file">
−
README.TIPP.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#ce6c81ff32edebf71116a3c16352eb4562def454">
README.UPP.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#f168b81935360ddcf2dd0f2d4b98b8603829060f">
debian/README.Debian
</a>
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<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
debian/README.source
</a>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
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<li class="file-stats">
<a href="#97d1ef36b5d0b6d33012897bd58c4b0d9fbd4c3e">
debian/man/run-sepp.sh.1
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<a href="#e705f9c0b5d0a2a928ec403c9867eb9f3c90ae9a">
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debian/man/run_abundance.py.1
</span>
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<a href="#3478ac7e366d3400eb723ca169ed100babf034f5">
debian/man/run_sepp.py.1
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<a href="#3410c7cb3f54c55cbccdb8139f0e943f18023a2a">
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debian/man/run_tipp.py.1
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<a href="#081912cd59d7da5c7ef903dd7b2839c5fb721ad3">
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debian/man/run_tipp_tool.py.1
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<a href="#ca13c5da842c9c77dd19d666915c7a61726b1901">
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debian/man/tipp.config.5
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<li class="file-stats">
<a href="#8a5501661d0634356baa31697665b72b16f41f4d">
debian/patches/change_java_version_for_ant.patch
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<a href="#46407b1326bdee026280065f20152516ad775d7c">
debian/patches/configuration_files_in_etc_and_per_user.patch
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<a href="#c7ac154ea78b0726c974928302e250aedcc397d4">
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debian/patches/hmmbuild_path_for_testUPP.patch
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debian/patches/java_build.patch
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debian/patches/json_collections.patch
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debian/patches/series
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debian/patches/setup.patch
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debian/patches/use_debian_packaged_guppy_from_pplacer.patch
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debian/patches/using_python3_interpreter.patch
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debian/rules
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<h5>The diff was not included because it is too large.</h5>
</div>
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