<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/htsjdk">Debian Med / htsjdk</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/b869680be30cad9b627cb669d899eac50d20f682">b869680b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-17T22:36:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.24.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/779de1bea8dd04e4ec86b450527e40cedf2cff6a">779de1be</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-17T22:37:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.24.1+dfsg'
Update to upstream version '2.24.1+dfsg'
with Debian dir cb654b32388c697a697d1931f4038fb47a7f64a0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/0fb7936c6d9c104c5d360d85049fa230d1822e12">0fb7936c</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-17T22:40:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing poms
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/10e509a4a97497d45efe610ec6f861a5cf852b1f">10e509a4</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-17T22:54:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/4caddb24ad7a560943f500ad4f86335ee2b60eda">4caddb24</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-21T21:36:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skipping more tests using http
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/6809f5d42f24111f3ad21255063c24a3c26bd32d">6809f5d4</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-21T21:37:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/49f5b8ec4c8255151657e823b9273deb3e68aecb">49f5b8ec</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-21T21:37:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing classpath
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/f5fdc1b9dbef41ec4bba08b6cba82264faaff232">f5fdc1b9</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-21T22:23:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using json-simple instead of unpackaged mjson
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/6dcff872c699ea21ec607b9f65823c6d9a9d1e1c">6dcff872</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-21T22:24:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating dependencies list
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/9b4006905b301b8ee4232204e7e9479b63191feb">9b400690</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-21T22:27:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding myself as uploader
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/8963d74d5fd3844822e16aa5be41213e277dc02c">8963d74d</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-21T22:29:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removing default gbp.conf file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/ac2dc2897d55f69519d84a49644b8a747db12d76">ac2dc289</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-21T23:13:27+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding a Lintian override for the embedded Javascript
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/9ac703b9b76b4bdc19f839a0620fd496160b652b">9ac703b9</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T16:48:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/187808017b0953737287a796c07108757c8b2391">18780801</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T16:49:54+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Setting Standards version to 4.6.0 (no change)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/05fd7d9b05c64aa24a6d31af2009b93c58ab2c2d">05fd7d9b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T16:51:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removing now useless versioned dependency on default-jdk
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/b22b023d13d66f4e5fab97e58c645aae8015e249">b22b023d</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T16:59:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Marking the -doc package as Multi-Arch: foreign
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/1a16080462ee13bc0ab3862f15de0eb5a20be0c0">1a160804</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T17:01:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/3af9b51a96bbf7eaf492a65d23d02a4ddb1d008d">3af9b51a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T17:03:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Trim trailing whitespace.
Changes-By: lintian-brush
Fixes: lintian: trailing-whitespace
See-also: https://lintian.debian.org/tags/trailing-whitespace.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/6c8ded58186cdb1e4c78eb91ea8a86ab721d2df4">6c8ded58</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T17:03:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/91b3ce4662a54ae6e5a36f7786098d1ce36e8159">91b3ce46</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T17:31:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Forwarding patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/2954c6f4ccaed11b271b9b561366c752d078d8e6">2954c6f4</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T17:34:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding description of patch 120-fix-build.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/d6c94757300d3bf0027314ac9b5abefcf01af21c">d6c94757</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T22:03:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing libhtsjdk-java.README.Debian
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/bd5afd0f039de49384c8e50a00f45f38a5b0a848">bd5afd0f</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-23T23:28:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#67df3adc98b97f87d2c73e4a05f22a987c3a5a7b">
<span class="deleted-file">
−
debian/gbp.conf
</span>
</a>
</li>
<li class="file-stats">
<a href="#c8c726c9c45ea77bb11f9d79575dda5f2770aee3">
debian/htsjdk.pom
</a>
</li>
<li class="file-stats">
<a href="#23ace2ce5518061709dd2e261fa002cac72a9cdf">
debian/htsjdk.pom.asc
</a>
</li>
<li class="file-stats">
<a href="#c3bdb3d2bb6a898c31a4d861b4d9bcfee9d26fe5">
<span class="new-file">
+
debian/libhtsjdk-java-doc.lintian-overrides
</span>
</a>
</li>
<li class="file-stats">
<a href="#1371a234b0b8c2c27bdd0c951ff342b66ffda6cc">
debian/libhtsjdk-java.README.Debian
</a>
</li>
<li class="file-stats">
<a href="#ebc84475be7ad87c1e7a0caa944982aa6ab1e0cf">
debian/libhtsjdk-java.classpath
</a>
</li>
<li class="file-stats">
<a href="#e186644cad34bbb8e38eb75706855e6cd177ad48">
debian/patches/10-build.xml.patch
</a>
</li>
<li class="file-stats">
<a href="#eacc88751a9dfebcbf60538e262fa864e473a2b8">
debian/patches/100-fix-java11
</a>
</li>
<li class="file-stats">
<a href="#1e654adf99a8c857b5731b0e3de199d955a3d7ca">
debian/patches/110-debian-lib-version.patch
</a>
</li>
<li class="file-stats">
<a href="#b4e355e83bca00202a902361a030a5e71f4c49ce">
debian/patches/120-fix-build.patch
</a>
</li>
<li class="file-stats">
<a href="#845f85d068e07bdd1483c300f414061ec19005fe">
<span class="new-file">
+
debian/patches/130-use-json-simple-instead-of-mjson.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#332134ca0ea8ce03ab7b9306e9ab516ad5c70bb6">
debian/patches/20-fix-version.patch
</a>
</li>
<li class="file-stats">
<a href="#7e10b3631d1a294f02feb67ba029333d859573e3">
debian/patches/30-disable-scalatest.patch
</a>
</li>
<li class="file-stats">
<a href="#0e145a9888f04e5bcc1b32e5ba78679670498477">
debian/patches/40-fix-java9
</a>
</li>
<li class="file-stats">
<a href="#52b48dcfaeb86a97b0a2e932ab203797ce0ef59c">
debian/patches/60-enable-tests
</a>
</li>
<li class="file-stats">
<a href="#afa69f1864a640d78b28a0978711183ce67df6df">
debian/patches/80-2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#a69d7a92eb7bbb495ef85fc6c78e5166c47386b3">
debian/patches/90-disable-testftp.patch
</a>
</li>
<li class="file-stats">
<a href="#45a5d5d6fee92c99102cebc37efea96fcbbb35b8">
debian/patches/92-disable-testhttp.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#14edc413e9dc7f33d9dfec4ab78ab93f77183c87">
<span class="new-file">
+
scripts/htsget-scripts/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#ff6ac8945b7f3b83a4d42f5de34956f26949210e">
<span class="new-file">
+
scripts/htsget-scripts/htsget_config.json
</span>
</a>
</li>
<li class="file-stats">
<a href="#4613c31cac70ad6935e3ff6cc2d3e96deff74ca5">
<span class="new-file">
+
scripts/htsget-scripts/start-htsget-test-server.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#703fde6d8b024b2f84429199a95907848ca6ef21">
<span class="new-file">
+
src/main/java/htsjdk/io/AsyncWriterPool.java
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/htsjdk/-/compare/61e92f8db4a97f951e2f45b56f2707c96d7ff3b8...bd5afd0f039de49384c8e50a00f45f38a5b0a848">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>