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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/isovic-seqlib">Debian Med / isovic-seqlib</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/isovic-seqlib/-/commit/5009c794af61c22e6c1a022b27ba7f6d442faea9">5009c794</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-11-23T17:37:47+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enable building gindex
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#6d5507768ac8975f221ead23baef90cb894ce802">
debian/patches/autoconf.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="6d5507768ac8975f221ead23baef90cb894ce802">
<a href="https://salsa.debian.org/med-team/isovic-seqlib/-/commit/5009c794af61c22e6c1a022b27ba7f6d442faea9#6d5507768ac8975f221ead23baef90cb894ce802"><strong>debian/patches/autoconf.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,17 +20,17 @@ Description: Create a proper library from the code to enable</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+lib_LTLIBRARIES = libisovic_seqlib.la</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libisovic_seqlibdir=$(includedir)/isovic-seqlib</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libisovic_seqlib_HEADERS= sequences/sequence_alignment.h sequences/sequence_file.h sequences/sequence_gfa.h sequences/single_sequence.h \</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ utility/tictoc.h utility/utility_general.h</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libisovic_seqlib_HEADERS= sequences/sequence_alignment.h sequences/sequence_file.h sequences/sequence_gfa.h sequences/single_sequence.h <span class="idiff left right">sequences/kseq.h </span>\</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ utility/tictoc.h utility/utility_general.h<span class="idiff left right"> utility/utility_conversion-inl.h log_system/log_system.h</span></span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libisovic_seqlib_la_SOURCES = algorithm/fenwick.h algorithm/lis.hpp \</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ libs/edlib.cc libs/edlibcigar.cc libs/edlibcigar.h libs/edlib.h libs/opal.cc libs/opal.h \</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ log_system/log_system.cc <span class="idiff left right">log_system/log_system.h </span>\</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <span class="idiff left right">sequences/kseq.h </span>sequences/sequence_alignment.cc \</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ log_system/log_system.cc \</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sequences/sequence_alignment.cc \</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sequences/sequence_alignment_test.cc sequences/sequence_file.cc \</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sequences/sequence_gfa.cc sequences/sequence_gfa_test.cc \</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sequences/sequence_test.h sequences/single_sequence.cc \</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ utility/evalue.cc utility/evalue_constants.cc utility/evalue_constants.h utility/evalue.h \</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ utility/tictoc.cc <span class="idiff left right">utility/utility_conversion-inl.h </span>utility/utility_general.cc</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ utility/tictoc.cc utility/utility_general.cc</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libisovic_seqlib_la_LDFLAGS = -version-info @LIB_VERSION@</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libisovic_seqlib_la_CPPFLAGS = $(INCLUDES)</span></span>
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<a href="https://salsa.debian.org/med-team/isovic-seqlib/-/commit/5009c794af61c22e6c1a022b27ba7f6d442faea9#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,6 +13,11 @@ include /usr/share/dpkg/default.mk</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> # fix path in header files</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> sed -i \</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> -e 's:include "sequences\(/.*\.h\)":include <$(DEB_SOURCE)\1>:' \</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> -e 's:include "utility\(/.*\.h\)":include <$(DEB_SOURCE)\1>:' \</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> debian/tmp/usr/include/*/*.h</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> d-shlibmove --commit \</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> --multiarch \</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> --devunversioned \</span>
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