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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6725b99b91bee7dce3fdb77f09b0caa3c832d578">6725b99b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-01T13:42:23+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6725b99b91bee7dce3fdb77f09b0caa3c832d578#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 01 Dec 2021 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 01 Dec 2021 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">82</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">9</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 5<span class="idiff left right">5</span> | {imaging,oncology,his,practice,laboratory,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> amide | 3<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">4</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">79</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">8</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 5<span class="idiff left right">4</span> | {imaging,oncology,his,practice,laboratory,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> amide | 3<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">5</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dcm2niix | 24 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> gdcm | 24 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> dicom3tools | 23 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> openslide | 20 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm | 16 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gnumed-server | 16 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> odin | 16 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> gnumed-server | 15 | {practice,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> mrtrix3 | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> mrtrix3 | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> minc-tools | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> orthanc-webviewer | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> dicomnifti | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,7 +34,6 @@ Last-Update: Wed, 01 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> plastimatch | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> ngs-sdk | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> openslide | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> jebl2 | 5 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,16 +49,15 @@ Last-Update: Wed, 01 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> oscar | 4 | {data,tools,practice} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> salmon | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> treeview | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> embassy-domalign | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> papyrus | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> phyutility | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> pymia | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> salmon | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> stacks | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> arden | 2 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,12 +75,12 @@ Last-Update: Wed, 01 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> libbio-mage-utils-perl | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> obitools | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> piler | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> proalign | 2 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> rtax | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> sibsim4 | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> staden | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> acedb | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> anfo | 1 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,7 +89,6 @@ Last-Update: Wed, 01 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> bambamc | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> biomaj3-cli | 1 | {cloud} | </span>
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> bitseq | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> bmtk | 1 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> brig | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> cat-bat | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> clonalframeml | 1 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -102,7 +99,6 @@ Last-Update: Wed, 01 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> fsm-lite | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> gatb-core | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> gifticlib | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> hinge | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> libbpp-core | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> libbpp-phyl | 1 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -141,12 +137,14 @@ Last-Update: Wed, 01 Dec 2021 01:42:04 +0000</td>
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> rdp-alignment | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> rdp-classifier | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> spread-phy | 1 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> srf | 1 | {bio-dev} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> thesias | 1 | {covid-19,bio} | </span>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> varna | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> vienna-rna | 1 | {covid-19,bio} | </span>
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> zalign | 1 | {bio,cloud} | </span>
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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149
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> bmtk | 0 | {psychology} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> ctn | 0 | {imaging-dev} | </span>
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> cufflinks | 0 | {bio,cloud} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -157,6 +155,7 @@ Last-Update: Wed, 01 Dec 2021 01:42:04 +0000</td>
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157
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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158
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> emperor | 0 | {bio} | </span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> gifticlib | 0 | {imaging-dev} | </span>
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> htscodecs | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> intake | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> jmodeltest | 0 | {bio,bio-phylogeny} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -208,5 +207,5 @@ Last-Update: Wed, 01 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> xdffileio | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> tipp | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext">(23<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext">(23<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"></span></pre>
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