<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Pierre Gruet pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/02c98cce9c5d11ab5b8d83cf25facadf17c5736f">02c98cce</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-17T21:47:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.26.5+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/35fe7b686c72df9c0e8e46f952bc58ac82a13f97">35fe7b68</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-11-27T20:58:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.26.6+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#ed7a5e9dc0e0c0bf286ef4d767cb3b64a25240a1">
<span class="new-file">
+
.github/workflows/trivy.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#79b82ce9b64a924266619555502f890dd80c83b9">
LICENSE.txt
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#6909ff640be7be2de90d276c91938e5bcd21a003">
build_push_docker.sh
</a>
</li>
<li class="file-stats">
<a href="#80f7f4f2d503ed49db919308d5652f121be7475f">
<span class="new-file">
+
scripts/travis/check_for_pull_request
</span>
</a>
</li>
<li class="file-stats">
<a href="#bac4c9ac8d5063b8b48c84e1a30915ee1d4b4523">
src/main/java/picard/analysis/AlignmentSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#39ad2a42470243aa1402488d16e8309995fc1180">
src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
</a>
</li>
<li class="file-stats">
<a href="#3a02115cc24686ccecd94ec7f340c5890a553d38">
src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#8d7507e76526876f60daef574438762bd6f57ab0">
src/main/java/picard/analysis/CollectBaseDistributionByCycle.java
</a>
</li>
<li class="file-stats">
<a href="#39018791387cf476a9ea4511dd7a82d4982e3c05">
src/main/java/picard/analysis/CollectGcBiasMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#a8427986ca1c000c6402307f4ef77043d503630e">
src/main/java/picard/analysis/CollectInsertSizeMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#5a50cf7890c2934c93d21101ade49bf5551587ea">
src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#c224cce9721892da1834c94773de15da5dd22df4">
src/main/java/picard/analysis/CollectOxoGMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#b2834490f63ed514ea04878a07bfeb9a3745de6c">
src/main/java/picard/analysis/CollectQualityYieldMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#ef73529293175de94b68d4817a681e5643b34dd8">
src/main/java/picard/analysis/CollectRnaSeqMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#13f54df4e2b29414eecb5c0cbc1da4d3e02dc14e">
src/main/java/picard/analysis/CollectRrbsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#ef17ffbbef833877458003eb2f12fc07610dfc1e">
src/main/java/picard/analysis/CollectWgsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#9a97429e0fb33ada2f86ffefa4c68b6a1554dab7">
src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
</a>
</li>
<li class="file-stats">
<a href="#da9ff87ef6c58326bf722021f76a9882a5eea09c">
src/main/java/picard/analysis/MeanQualityByCycle.java
</a>
</li>
<li class="file-stats">
<a href="#8d0504dc5db7e6ffe8a19828bf6d32a8aff6f8dc">
src/main/java/picard/analysis/QualityScoreDistribution.java
</a>
</li>
<li class="file-stats">
<a href="#1914f7efb36dc5bc0e2d21c7b0121b6be61785d6">
src/main/java/picard/analysis/RnaSeqMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#a1e25612276960b201d9078bebb48c2a3c52e3fc">
src/main/java/picard/analysis/SinglePassSamProgram.java
</a>
</li>
<li class="file-stats">
<a href="#9af105d9cdd2d7f8a89fb06cade4843d35624ea0">
src/main/java/picard/analysis/directed/CollectTargetedMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#89581ac0b61dde434443cdf65afd6f4e5f19399d">
src/main/java/picard/analysis/directed/RnaSeqMetricsCollector.java
</a>
</li>
<li class="file-stats">
<a href="#ad1f1dc5e8b9664bb405dbc8386d79b194eada83">
src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#d51e483d84e3c338e2ed4b9a877390c379c2e2e8">
src/main/java/picard/annotation/RefFlatReader.java
</a>
</li>
<li class="file-stats">
<a href="#caca4652412e0ecbe3356b37541444fd12035db8">
<span class="new-file">
+
src/main/java/picard/annotation/SortGff.java
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/picard-tools/-/compare/83ec790bdd93a561288ad0fc1230b3773777ad85...35fe7b686c72df9c0e8e46f952bc58ac82a13f97">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>