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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-blastplus">Debian Med / ncbi-blastplus</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/6d59593bbb9e26daa08ef2664b41c1eb7c8da8fb">6d59593b</a></strong>
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<span>by Aaron M. Ucko</span>
<i>at 2021-12-01T23:29:34-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Start work on ncbi-blast+ 2.12.0+ds-2.
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<strong><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/20140be4e979751c6f8f508caa59be165a13ec2b">20140be4</a></strong>
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<span>by Aaron M. Ucko</span>
<i>at 2021-12-01T23:30:19-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Clean up spurious release-status comment from 2.12.0+ds-1.
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<strong><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/6e35cf03c88a3d05486283c6ca645442965dfb81">6e35cf03</a></strong>
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<span>by Aaron M. Ucko</span>
<i>at 2021-12-01T23:35:52-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/p/system_mbedtls_only: Patch out use of local mbed TLS headers
... which formally rename all symbols.
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<strong><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/b242407d84ce92d703bc337ecfd05449dce6ea78">b242407d</a></strong>
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<span>by Aaron M. Ucko</span>
<i>at 2021-12-01T23:36:33-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Finalize ncbi-blast+ 2.12.0+ds-2 for unstable.
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<h4>2 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#7e1ac24187dc0d1cef895157104e69e6b3343f54">
debian/patches/system_mbedtls_only
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/abe4801f7dee38139c6d3c38c0f4774946d53971...b242407d84ce92d703bc337ecfd05449dce6ea78#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ncbi-blast+ (2.12.0+ds-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Clean up spurious release-status comment from 2.12.0+ds-1.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debian/patches/system_mbedtls_only: Patch out use of local mbed TLS</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> headers, which formally rename all symbols.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Aaron M. Ucko <ucko@debian.org> Wed, 01 Dec 2021 23:36:32 -0500</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">ncbi-blast+ (2.12.0+ds-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> * New upstream release.<span class="idiff left right"> (NOT RELEASED YET.)</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * New upstream release.</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * debian/patches: Update accordingly.</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> - fix_lib_deps, fix_unit_tests, spelling: Formally refresh to eliminate</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> fuzz.</span>
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<li id="7e1ac24187dc0d1cef895157104e69e6b3343f54">
<a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/abe4801f7dee38139c6d3c38c0f4774946d53971...b242407d84ce92d703bc337ecfd05449dce6ea78#7e1ac24187dc0d1cef895157104e69e6b3343f54"><strong>debian/patches/system_mbedtls_only</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Aaron M. Ucko <amu@ucko.debian.net></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Date: <span class="idiff left right">Sun Feb 3 21:43:23 2019</span> -0500</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Date: <span class="idiff left right">Wed, 01 Dec 2021 23:33:11</span> -0500</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Subject: Omit convenience mbed TLS copy</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/c++/src/connect/Makefile.connssl.lib</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/c++/src/connect/Makefile.connssl.lib</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,3 +14,21 @@ Subject: Omit convenience mbed TLS copy</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> mbedtls/aes mbedtls/aesni mbedtls/arc4 mbedtls/asn1parse \</span>
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> mbedtls/asn1write mbedtls/base64 mbedtls/bignum mbedtls/blowfish \</span>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> mbedtls/camellia mbedtls/ccm mbedtls/cipher mbedtls/cipher_wrap \</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/c++/src/connect/connect_misc_impl.hpp</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/c++/src/connect/connect_misc_impl.hpp</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="p">@@ -30,11 +30,10 @@</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> *</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> */</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include "mbedtls/mbedtls/ncbicxx_rename_mbedtls.h"</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include "mbedtls/mbedtls/error.h"</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include "mbedtls/mbedtls/ctr_drbg.h"</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include "mbedtls/mbedtls/entropy.h"</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include "mbedtls/mbedtls/ssl.h"</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <mbedtls/error.h></span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <mbedtls/ctr_drbg.h></span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <mbedtls/entropy.h></span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <mbedtls/ssl.h></span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> #include <corelib/ncbimisc.hpp></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> </span></pre>
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