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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-ruffus">Debian Med / python-ruffus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/96f62a79220afc72cf624e752ad286809584ac34">96f62a79</a></strong>
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<span>by Étienne Mollier</span>
<i>at 2021-12-06T21:51:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add reasonable-multiprocessing.patch
Closes: #841073
Adjust the process count of the test suite to count of cores available
in the test environment to reduce the memory footprint of the build.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/02e6042ebcd3046ef60ac051bafa47249f072668">02e6042e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-12-06T21:58:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: bump copyright years
</pre>
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<strong><a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/c02fb6761f6734605adf33a4427906fdbbb12f79">c02fb676</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-12-06T22:03:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: document file from Rebecca Chodroff
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-ruffus/-/commit/b073e80ed383309db2d4840b9b48d0b64a8d6dea">b073e80e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-12-06T22:10:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">ready changelog to upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<a href="#bd2664a32e0ecfd1a0ba62e1105697ceb8e8dcd9">
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+
debian/patches/reasonable-multiprocessing.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-ruffus/-/compare/8f59431591c2f846a2f6bebc681a565b8f80cb27...b073e80ed383309db2d4840b9b48d0b64a8d6dea#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-ruffus (2.8.4-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Add reasonable-multiprocessing.patch: adjust process count to cores</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> available and reduce the memory footprint of the build. (Closes: #841073)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * d/copyright: bump copyright years and reference file from Rebecca Chodroff.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Étienne Mollier <emollier@debian.org> Mon, 06 Dec 2021 22:10:12 +0100</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">python-ruffus (2.8.4-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Fix watchfile to detect new versions on github</span>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/python-ruffus/-/compare/8f59431591c2f846a2f6bebc681a565b8f80cb27...b073e80ed383309db2d4840b9b48d0b64a8d6dea#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,11 +16,15 @@ Files-Excluded: doc/_build/doctrees</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> doc/_build/latex/*.t*</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">Copyright: © 2010-2014 Leo Goodstadt <ruffus_lib@llew.org.uk></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Copyright: © 2009-2015 Leo Goodstadt <ruffus_lib@llew.org.uk></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Files: doc/images/gallery/gallery_dless.py</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Copyright: © 2010 Rebecca Chodroff</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">Copyright: © 2015 Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Copyright: © 2015<span class="idiff left right">-2021</span> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">License: MIT</span>
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<li id="bd2664a32e0ecfd1a0ba62e1105697ceb8e8dcd9">
<a href="https://salsa.debian.org/med-team/python-ruffus/-/compare/8f59431591c2f846a2f6bebc681a565b8f80cb27...b073e80ed383309db2d4840b9b48d0b64a8d6dea#bd2664a32e0ecfd1a0ba62e1105697ceb8e8dcd9"><strong>debian/patches/reasonable-multiprocessing.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: adjust multiprocessed pipeline to the machine's available cores</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> The purpose of the patch is to reduce the memory consumption on machines with</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> little resources, while keeping the tests of high cores count to more buffy</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> equipment.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Author: Étienne Mollier <emollier@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">Bug: https://github.com/cgat-developers/ruffus/issues/104</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=841073</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">Last-Update: 2021-12-06</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-ruffus.orig/ruffus/test/test_with_logger.py</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-ruffus/ruffus/test/test_with_logger.py</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="p">@@ -189,7 +189,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> pass</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> def test_simpler(self):</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- pipeline_run(multiprocess=500, verbose=0, pipeline="main")</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ pipeline_run(multiprocess=len(os.sched_getaffinity(0)), verbose=0, pipeline="main")</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> def test_newstyle_simpler(self):</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> test_pipeline = Pipeline("test")</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="p">@@ -202,7 +202,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> test_pipeline.merge(task4, task3, final_file_name,</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> extras=[logger_proxy, logging_mutex])</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> #test_pipeline.merge(task4, task3, final_file_name, extras = {"logger_proxy": logger_proxy, "logging_mutex": logging_mutex})</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- test_pipeline.run(multiprocess=500, verbose=0)</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ test_pipeline.run(multiprocess=len(os.sched_getaffinity(0)), verbose=0)</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> if __name__ == '__main__':</span></pre>
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<a href="https://salsa.debian.org/med-team/python-ruffus/-/compare/8f59431591c2f846a2f6bebc681a565b8f80cb27...b073e80ed383309db2d4840b9b48d0b64a8d6dea#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use_libjs-mathjax.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">sphinx4.patch</span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">ignore_test_proxy_logger.patch</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">reasonable-multiprocessing.patch</span></pre>
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