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GitLab
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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/samtools">Debian Med / samtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/-/commit/b14cda59ba7d4ec2c45b73ccc2047d482b4dd6bd">b14cda59</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T08:57:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.14</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
README
</a>
</li>
<li class="file-stats">
<a href="#76b53251c8199ebcc9af3230a5705ae8429c996a">
bam.c
</a>
</li>
<li class="file-stats">
<a href="#1bb0ee14ea54633c87c40fe410d73790a19569d2">
bam.h
</a>
</li>
<li class="file-stats">
<a href="#8b1f4a1b98b10acafd47fb3bc197a7f7410d59b6">
bam2bcf.c
</a>
</li>
<li class="file-stats">
<a href="#47e9e5b41a99db7f29a9c389319288b5be3dd44d">
bam2depth.c
</a>
</li>
<li class="file-stats">
<a href="#e234206ac144634fb441b03b025114103cbc982c">
bam_aux.c
</a>
</li>
<li class="file-stats">
<a href="#1caadcfb13bb565db92f193fa92a6db3c119fa33">
<span class="deleted-file">
−
bam_endian.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1b031362756348a3fc06a80a67e2440c22c1f4ad">
bam_fastq.c
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</li>
<li class="file-stats">
<a href="#7e7625df357c73e60fb5763cc5124783c1c76fc6">
bam_import.c
</a>
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<li class="file-stats">
<a href="#89a03e702f4bc3e36cdfde2781a3be558535682e">
bam_markdup.c
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</li>
<li class="file-stats">
<a href="#a933ca350aef7d0983a7c7029f2ef5b529f89ea5">
bam_plcmd.c
</a>
</li>
<li class="file-stats">
<a href="#ad908a7d8d476fe7525581606ebe74fee6c9ef3a">
bam_reheader.c
</a>
</li>
<li class="file-stats">
<a href="#60ba6dae98a18e4f2344c45e4311bc736de7d179">
<span class="new-file">
+
bam_samples.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#4554809383bbbc3e2470c76b4bfd91881ede7125">
bam_sort.c
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</li>
<li class="file-stats">
<a href="#19ca6d42013c2103588ff1e42bee19d5df9de59e">
bam_tview_curses.c
</a>
</li>
<li class="file-stats">
<a href="#bfc81e0a1121ab31c44ab8a041c8b63aa4167e0f">
bamtk.c
</a>
</li>
<li class="file-stats">
<a href="#ae4043bcca5a1bddf81eaec9e023257d15a2015d">
coverage.c
</a>
</li>
<li class="file-stats">
<a href="#131ea2eda9731473dd1cf610feea1c836c24ccb2">
doc/samtools-addreplacerg.1
</a>
</li>
<li class="file-stats">
<a href="#890899d7ef7d59def631cb6b62d724f647d1ea35">
doc/samtools-ampliconclip.1
</a>
</li>
<li class="file-stats">
<a href="#e841393fcf15d28d19530298ba64d7d1868506d2">
doc/samtools-ampliconstats.1
</a>
</li>
<li class="file-stats">
<a href="#4b8c2f7ba6fa197665c9cf755ac0e7c47ef7db6b">
doc/samtools-bedcov.1
</a>
</li>
<li class="file-stats">
<a href="#4c3d326fc8bbbf65887e3e6426ea12174df3531c">
doc/samtools-calmd.1
</a>
</li>
<li class="file-stats">
<a href="#33e2c5090c4952098ad28f0641247e1e9769750d">
doc/samtools-cat.1
</a>
</li>
<li class="file-stats">
<a href="#d9f205daf2940bd82b3b37a703ddf89bbb14dd51">
doc/samtools-collate.1
</a>
</li>
<li class="file-stats">
<a href="#264b9241d88d427e876a36aa185da92c181115c3">
doc/samtools-coverage.1
</a>
</li>
<li class="file-stats">
<a href="#31bffc3927893d7eac31c1fa42c32a311ecba796">
doc/samtools-depad.1
</a>
</li>
<li class="file-stats">
<a href="#8eed3f89ac995d831744524ed3ea1b302880d5df">
doc/samtools-depth.1
</a>
</li>
<li class="file-stats">
<a href="#2d60f719774cde5b2475cbc986ef29ffa735ad59">
doc/samtools-dict.1
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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