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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pysam">Debian Med / python-pysam</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/a95f6fca50508d6c903766fc157ef2c55bfdbfe4">a95f6fca</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T09:21:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/b9d055f3408a398a66a7581be362596073d52690">b9d055f3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T09:21:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.18.0+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/b52427a06a35815d7ca4bf244e9fcbecef1976e3">b52427a0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T09:21:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.18.0+ds'
Update to upstream version '0.18.0+ds'
with Debian dir 56361846805f33ba070134821867efdb2fd1768a</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/eb7774ee48730e5f772c7500d7dc2139ca56d072">eb7774ee</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T09:21:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: No tab in license text
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/a4ed6980622d922f54a83fbdd84312ac6b117967">a4ed6980</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T09:21:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update renamed lintian tag names in lintian overrides.
Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/fcf53a2a02262efef3364c45d8f53b31d1cd6824">fcf53a2a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T09:21:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Avoid explicitly specifying -Wl,--as-needed linker flag.
Changes-By: lintian-brush
Fixes: lintian: debian-rules-uses-as-needed-linker-flag
See-also: https://lintian.debian.org/tags/debian-rules-uses-as-needed-linker-flag.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/0518ef0296db6cb164904cd0b88c2934b9cf2e79">0518ef02</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T09:21:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove constraints unnecessary since buster
* Build-Depends: Drop versioned constraint on bcftools, libhts-dev and samtools.
Changes-By: deb-scrub-obsolete</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/e39be3eb9e6586ce37b5c52d5dd09f56db3bfdc7">e39be3eb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T15:07:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop outdated and unused tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/ad74243e5181fea8f71e0b82ab88bc0745c47581">ad74243e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T15:13:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove also win32 dir from upstream code (and when beeing at it also .github and .gitignore)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/671ef8fb403132b51234f97328bee378d4d2bc59">671ef8fb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T15:13:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.18.0+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/634fc36fa116b22e40e2678d16360cc97c7bc710">634fc36f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T15:13:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.18.0+ds'
Update to upstream version '0.18.0+ds'
with Debian dir fbe513c606d10f93e294607f45f5cce098219fe3</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/4635058438a485560303282411439547ee031db2">46350584</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T15:14:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to experimental
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/-/commit/b6c1f750168fdea1cd33b55bf5ec4e6341a466a2">b6c1f750</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-07T15:36:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove superflous file patterns from debian/copyright
</pre>
</li>
</ul>
<h4>23 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a91b1970808e533a5de67f93824231e12770a765">
<span class="deleted-file">
−
.github/workflows/ci.yaml
</span>
</a>
</li>
<li class="file-stats">
<a href="#3679a14291455b741a3f8e4314b4280f29f3c0ff">
<span class="deleted-file">
−
.github/workflows/release.yaml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
<span class="deleted-file">
−
.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#a6ff37b281ae15403476fcd5ebb91d8d5df79d90">
<span class="new-file">
+
Containerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#bf0a43679ba9de44db63c21cfaaab4c13b046460">
bcftools/abuf.c
</a>
</li>
<li class="file-stats">
<a href="#4a681d360c0cdcc37cf928592e704ba449b47a46">
bcftools/abuf.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#38f2fca9b910b46be301187a68db080cc6770e67">
bcftools/bam2bcf.c
</a>
</li>
<li class="file-stats">
<a href="#74d5e4573ce694cb34f610ad7397afdc133ab7d6">
bcftools/bam2bcf.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#03d75ee5d78a5bfabdc772145285f786dad2524c">
bcftools/bam2bcf.h
</a>
</li>
<li class="file-stats">
<a href="#09cc7e36a3afe6efc646ffeff27baeff7cd9218f">
bcftools/bam2bcf_indel.c
</a>
</li>
<li class="file-stats">
<a href="#16f088e739673bc8d64a629169048fe9d5d9ecc9">
bcftools/bam2bcf_indel.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#fa57713010929291368e32ac4160670c2e82006d">
bcftools/bcftools.h
</a>
</li>
<li class="file-stats">
<a href="#5fd37d81f8bd646724bcda881bb183102b6cc741">
bcftools/consensus.c
</a>
</li>
<li class="file-stats">
<a href="#5ab08c680272b1f43f9129cb0917e24e6e3f2f72">
bcftools/consensus.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#2c6658fac1da05c2325a860b4edea03f75093bd0">
bcftools/convert.c
</a>
</li>
<li class="file-stats">
<a href="#a7b8dc8b4cc2469dd5b0351aca5038b7a20b1efc">
bcftools/convert.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#a9be6f7b6f171d1c499d3ae69f5a7b0e82c2e8cc">
bcftools/convert.h
</a>
</li>
<li class="file-stats">
<a href="#d76d906d74b946f3bccb77ffee62e18a8a69d7c3">
bcftools/csq.c
</a>
</li>
<li class="file-stats">
<a href="#11fd9c587c6ace63e6aa709f33371ebce6eecdd3">
bcftools/csq.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#7cd32748f663895805a8c1af8f7cd8ca7747c35f">
bcftools/mcall.c
</a>
</li>
<li class="file-stats">
<a href="#f589bc6fa753203bd7fbfab3a56bf9fa5176a3e1">
bcftools/mcall.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#1d4d787d58e7fc883fb6f5a7ca0255749b64b4b7">
bcftools/mpileup.c
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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