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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/sambamba">Debian Med / sambamba</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/-/commit/37dbdad62afc4517f0bb54b4553d3f320af903ce">37dbdad6</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-12-09T08:18:04+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Does not Build-Depend libbiod-dev any more
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/-/commit/a0e8e435e946206cc121ee87f4846e16516c60ec">a0e8e435</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-09T08:18:40+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix watchfile to detect new versions on github
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/-/commit/d2102c0a99a2b72b6d6d462b0a469c8c30503525">d2102c0a</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-12-09T09:27:53+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream claims that biod is not needed - unfortunately there seem to be some remainings
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#0ea9f9c45dfa9cd1b8499007f1a74c2f302f301b">
<span class="new-file">
+
debian/patches/no_biod_needed.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sambamba/-/compare/093baaeeecf5a364ce58e055a4117620169f0864...d2102c0a99a2b72b6d6d462b0a469c8c30503525#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">sambamba</span> <span class="p">(</span><span class="m" style="color: #099;">0.8.1</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Does</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depend</span> <span class="n" style="color: #333;">libbiod</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="n" style="color: #333;">any</span> <span class="n" style="color: #333;">more</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">watchfile</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">detect</span> <span class="n" style="color: #333;">new</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">github</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span> <span class="p"><</span><span class="n" style="color: #333;">tille</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Thu</span><span class="p">,</span> <span class="m" style="color: #099;">09</span> <span class="n" style="color: #333;">Dec</span> <span class="m" style="color: #099;">2021</span> <span class="m" style="color: #099;">08</span><span class="p">:</span><span class="m" style="color: #099;">18</span><span class="p">:</span><span class="m" style="color: #099;">47</span> <span class="p">+</span><span class="m" style="color: #099;">0100</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"><span class="n" style="color: #333;">sambamba</span> <span class="p">(</span><span class="m" style="color: #099;">0.8.1</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">upload</span><span class="p">.</span></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/sambamba/-/compare/093baaeeecf5a364ce58e055a4117620169f0864...d2102c0a99a2b72b6d6d462b0a469c8c30503525#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,9 +5,8 @@ Section: science</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh-dlang,</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> libbiod-dev,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libhts-dev (>= 1.10.2-4),</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> meson<span class="idiff left right"> (>= 0.48)</span>,</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> meson,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> pkg-config,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python3,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> shunit2 <!nocheck>,</span>
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<li id="0ea9f9c45dfa9cd1b8499007f1a74c2f302f301b">
<a href="https://salsa.debian.org/med-team/sambamba/-/compare/093baaeeecf5a364ce58e055a4117620169f0864...d2102c0a99a2b72b6d6d462b0a469c8c30503525#0ea9f9c45dfa9cd1b8499007f1a74c2f302f301b"><strong>debian/patches/no_biod_needed.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/meson.build</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/meson.build</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -81,7 +81,6 @@</span> manpages = [</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> #</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> # Dependencies</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> #</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-biod_dep = dependency('biod', version: '>=0.1.0', static: true)</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> lz4_dep = dependency('liblz4')</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> #</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">@@ -111,8 +110,7 @@</span> sambamba_exe = executable('sambamba',</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> cram_src,</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> thirdparty_src,</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> version_info_d_fname],</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- dependencies: [biod_dep,</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- lz4_dep],</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ dependencies: [lz4_dep],</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> d_args: extra_dflags,</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> d_import_dirs: [include_directories('.')],</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> install: true</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/sambamba/-/compare/093baaeeecf5a364ce58e055a4117620169f0864...d2102c0a99a2b72b6d6d462b0a469c8c30503525#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">2to3.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">MakefilePointerToStaticLib.patch</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">fix_meson_syntax.patch</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">no_biod_needed.patch</span></pre>
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<li id="68ef9f98c01c7eecd4c605cc26048a06f3304b79">
<a href="https://salsa.debian.org/med-team/sambamba/-/compare/093baaeeecf5a364ce58e055a4117620169f0864...d2102c0a99a2b72b6d6d462b0a469c8c30503525#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,4 +5,4 @@ repacksuffix=+dfsg,\</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">repack,compression=xz,\</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">uversionmangle=s/-/~/,\</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">dversionmangle=s/\+(debian|dfsg|ds|deb)(\.\d+)?$// \</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> https://github.com/lomereiter/sambamba/releases .*/<span class="idiff left right">archive/</span>.*/v(\d[\d.pre-]+)@ARCHIVE_EXT@</span></pre>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> https://github.com/lomereiter/sambamba/releases .*/.*/v(\d[\d.pre-]+)@ARCHIVE_EXT@</span></pre>
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