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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/696600694af47e9f497d72276d1d8a43d786e365">69660069</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-09T13:42:21+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/696600694af47e9f497d72276d1d8a43d786e365#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 09 Dec 2021 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 09 Dec 2021 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">3</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">2</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 98 | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 52 | {imaging,oncology,his,practice,laboratory,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> amide | 34 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">8</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> htsjdk | 25 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 24 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> gdcm | 19 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> htsjdk | 26 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 23 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gdcm | 20 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm | 17 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> mrtrix3 | 17 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gdcm | 16 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gnumed-server | 15 | {practice,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> minc-tools | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> gnumed-server | 14 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> openslide | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> ngs-sdk | 12 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> orthanc-webviewer | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> dicomnifti | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> ngs-sdk | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> mia | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> plastimatch | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> adun.app | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> king | 10 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> mia | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> biojava-live | <span class="idiff left right">7</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> biojava-live | <span class="idiff left right">8</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> nifticlib | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> jebl2 | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> ngs-sdk | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> oscar | 6 | {data,tools,practice} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> jebl2 | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> ngs-sdk | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> nifti2dicom | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> openslide | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> oscar | 5 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> rambo-k | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> treeview | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> embassy-domalign | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,9 +53,9 @@ Last-Update: Thu, 09 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> staden | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> arden | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> <span class="idiff left">dicompyler</span> | 3 | {<span class="idiff right">oncology}</span> | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> <span class="idiff left">canu </span> | 3 | {<span class="idiff right">bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> embassy-doma<span class="idiff left right">lign </span> | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> embassy-doma<span class="idiff left right">inatrix</span> | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> embassy-domsearch | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,19 +71,22 @@ Last-Update: Thu, 09 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> beast-mcmc | 2 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> bio-tradis | 2 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> <span class="idiff left right">canu</span> | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> <span class="idiff left right">brig</span> | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> clonalorigin | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> <span class="idiff left">embassy-domainatrix</span> | 2 | {bio<span class="idiff right">,cloud}</span> | </span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> <span class="idiff left">gatb-core </span> | 2 | {bio<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> ghmm | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> ipig | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> jellyfish1 | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> mhap | 2 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> nipype | 2 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> orthanc-python | 2 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> pigx-rnaseq | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> proalign | 2 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> rdp-classifier | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> rtax | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> spread-phy | 2 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> zalign | 2 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -90,24 +95,21 @@ Last-Update: Thu, 09 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> biomaj3-cli | 1 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> brig | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> cat-bat | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> clonalframeml | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> cmtk | 1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> delly | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> fastml | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> fsm-lite | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> gatb-core | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> hinge | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> jmodeltest | 1 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> libics | 1 | {covid-19,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> libncl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> mauve-aligner | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> metaphlan2 | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> mhap | 1 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> microbegps | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -119,7 +121,6 @@ Last-Update: Thu, 09 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> python-wdlparse | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> qcumber | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> rdp-alignment | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> rdp-classifier | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> sga | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> soapaligner | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -141,7 +142,6 @@ Last-Update: Thu, 09 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> cutesv | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> dextractor | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> eegdev | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> emboss-explorer | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> emperor | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="">Last-Update: Thu, 09 Dec 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="">Last-Update: Thu, 09 Dec 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">5</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang=""> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="">-------------------------------+--------------------------------+--------------------------------+---------------------------------------------------------------------------------+-----------------------+------------------------</span>
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