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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/60f857941ce566a048874da1a629c4bdb1f87dc7">60f85794</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-13T13:42:20+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/60f857941ce566a048874da1a629c4bdb1f87dc7#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 13 Dec 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">3</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 13 Dec 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">5</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">4</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 98 | {covid-19,practice,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 52 | {covid-19,oncology,his,laboratory,practice,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> amide | 3<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> <span class="idiff left">htsjdk </span> | 2<span class="idiff">8</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> <span class="idiff left">dicom3tools</span> | 2<span class="idiff">7</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> amide | 3<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> <span class="idiff left">dicom3tools</span> | 2<span class="idiff">6</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> <span class="idiff left">htsjdk </span> | 2<span class="idiff">6</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicomscope | 22 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 20 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 16 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 14 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> mrtrix3 | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> orthanc-webviewer | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> mrtrix3 | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> openslide | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> dicomnifti | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> mia | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> king | 9 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> dicomnifti | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> plastimatch | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> <span class="idiff left">nifticlib</span> | 8 | {<span class="idiff right">imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> <span class="idiff left">king </span> | 8 | {<span class="idiff right">typesetting,imaging}</span> | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> nifticlib | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> ngs-sdk | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> nifticlib | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> nifti2dicom | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> openslide | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> rambo-k | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> salmon | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> treeview | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> embassy-domalign | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> nifti2dicom | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> oscar | 4 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> salmon | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> stacks | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> staden | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -60,6 +60,7 @@ Last-Update: Mon, 13 Dec 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> melting | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> nifti2dicom | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> obitools | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> phyutility | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> pymia | 3 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -106,7 +107,6 @@ Last-Update: Mon, 13 Dec 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> hinge | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> jmodeltest | 1 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> libics | 1 | {imaging-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> libncl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> libpal-java | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> mauve-aligner | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -164,6 +164,7 @@ Last-Update: Mon, 13 Dec 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> libgenome | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> libgkarrays | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> libics | 0 | {imaging-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> libmaus2 | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -188,8 +189,8 @@ Last-Update: Mon, 13 Dec 2021 01:42:03 +0000</td>
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> pique | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> pplacer | 0 | {covid-19,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -206,5 +207,5 @@ Last-Update: Mon, 13 Dec 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> tipp | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext">(23<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext">(23<span class="idiff left right">5</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/60f857941ce566a048874da1a629c4bdb1f87dc7#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="">Last-Update: Mon, 13 Dec 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="">Last-Update: Mon, 13 Dec 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">5</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang=""> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="">-------------------------------+--------------------------------+--------------------------------+---------------------------------------------------------------------------------+-----------------------+------------------------</span>
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