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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2060f5cd7a8d4e2c7d0efd69e412be632f9ecf26">2060f5cd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-12-16T13:42:22+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2060f5cd7a8d4e2c7d0efd69e412be632f9ecf26#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 16 Dec 2021 <span class="idiff left right">0</span>1:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 16 Dec 2021 1<span class="idiff left right">3</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">71</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">6</span> | {covid-19,practice,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | <span class="idiff left right">50</span> | {covid-19,oncology,his,laboratory,practice,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> amide | 3<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> <span class="idiff left">dcm2niix</span> | <span class="idiff">28</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> <span class="idiff left">htsjdk </span> | 28 | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> d<span class="idiff left right">icom3tools</span> | 27 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">68</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">3</span> | {covid-19,practice,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | <span class="idiff left right">49</span> | {covid-19,oncology,his,laboratory,practice,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> amide | 3<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> <span class="idiff left">htsjdk </span> | <span class="idiff">30</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> <span class="idiff left">dicom3tools</span> | 28 | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> d<span class="idiff left right">cm2niix </span> | 27 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 20 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 18 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> invesalius | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> minc-tools | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> openslide | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> gnumed-server | 14 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> openslide | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> mrtrix3 | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> orthanc-webviewer | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> orthanc-webviewer | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> dicomnifti | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> mia | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> ngs-sdk | 11 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> plastimatch | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> dicomnifti | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> biojava-live | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> king | 8 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> nifticlib | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> king | 9 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> nifticlib | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> libncl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> openslide | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> nifticlib | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> rambo-k | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> treeview | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> dicompyler | 5 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> embassy-domalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> nifti2dicom | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> openslide | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> oscar | 5 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> runcircos-gui | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> salmon | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> tracetuner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> arden | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> <span class="idiff left">dicompyler</span> | 4 | {<span class="idiff right">oncology} </span> | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> <span class="idiff left">beast-mcmc</span> | 4 | {<span class="idiff right">bio,bio-phylogeny}</span> | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> embassy-domainatrix | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> embassy-domsearch | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> melting | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> ngs-sdk | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> nifti2dicom | 4 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> nipype | 4 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> oscar | 4 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> phyutility | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> saint | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> sibsim4 | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> stacks | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> staden | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> anfo | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> b<span class="idiff left">east-mcmc</span> | 3 | {<span class="idiff right">bio,bio-phylogeny}</span> | </span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> b<span class="idiff left">art-view </span> | 3 | {<span class="idiff right">imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> bio-tradis | 3 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> bitseq | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -78,8 +79,8 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> mhap | 3 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> nipype | 3 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> obitools | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> proalign | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> pymia | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -87,12 +88,11 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> spread-phy | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> zalign | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> assemblytics | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> atropos | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> bart-view | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> biomaj3-cli | 2 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> cat-bat | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> clonalframeml | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> cmtk | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> delly | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> fastml | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> fsm-lite | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -104,6 +104,7 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> microbegps | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> orthanc-python | 2 | {covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> pigx-rnaseq | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> piler | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> placnet | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -123,7 +124,7 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> varna | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> acedb | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext"> <span class="idiff left">cmtk </span> | 1 | {<span class="idiff right">imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> <span class="idiff left">atropos</span> | 1 | {<span class="idiff right">bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> cufflinks | 1 | {bio,cloud} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> dextractor | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -133,10 +134,8 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000</td>
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> libncl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> metaphlan2 | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> pique | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> pplacer | 1 | {covid-19,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> python-wdlparse | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> shovill | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> spaln | 1 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -197,6 +196,7 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000</td>
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> python-wdlparse | 0 | {bio-dev} | </span>
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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