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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/gubbins">Debian Med / gubbins</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/d47c4b2b2682ae37ab69847613daaeec1c778caa">d47c4b2b</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-12-19T02:16:22+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Switch from nosetest -> pytest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/67297c1599b0e9a6c51255dc1d7a293f3497341b">67297c15</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-12-19T02:17:33+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: B-D on python3-pytest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/47586c783ae4f2d13930b857f9ad7d009ef9c76b">47586c78</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-12-19T02:18:01+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">[skip ci] Interim changelog entry
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#6daa2f08a5868e96950e63805c4e806b764e6534">
<span class="new-file">
+
debian/patches/port-to-pytest.patch
</span>
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
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</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/gubbins/-/compare/1063e991c50ab2c4018444b3bcdfbe3dfdd086cc...47586c783ae4f2d13930b857f9ad7d009ef9c76b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">gubbins (3.1.0-1) UNRELEASED; urgency=medium</span>
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<td class="new_line diff-line-num" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<td class="new_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="new_line diff-line-num" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * New upstream version</span>
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<td class="new_line diff-line-num" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.6.0 (routine-update)</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,7 +15,10 @@ gubbins (3.1.0-1) UNRELEASED; urgency=medium</td>
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<td class="old_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * d/control: update uploader address</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * d/watch: bump to uscan version 4 and fix broken link to github</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 11 Oct 2021 10:59:32 +0200</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> [ Nilesh Patra ]</span>
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<td class="new_line diff-line-num new" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> * Switch from nosetest -> pytest</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Sun, 19 Dec 2021 02:16:29 +0530</span>
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<td class="new_line diff-line-num" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<td class="old_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="new_line diff-line-num" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">gubbins (2.4.1-4) unstable; urgency=medium</span>
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<td class="new_line diff-line-num" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/gubbins/-/compare/1063e991c50ab2c4018444b3bcdfbe3dfdd086cc...47586c783ae4f2d13930b857f9ad7d009ef9c76b#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,7 +17,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> python3-biopython,</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> python3-dendropy,</span>
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<td class="new_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> python3-reportlab,</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> python3-<span class="idiff left right">nose</span>,</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> python3-<span class="idiff left right">pytest</span>,</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> python3-scipy <!nocheck>,</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> python3-multiprocess <!nocheck>,</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> python3-wheel <!nocheck></span>
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<li id="6daa2f08a5868e96950e63805c4e806b764e6534">
<a href="https://salsa.debian.org/med-team/gubbins/-/compare/1063e991c50ab2c4018444b3bcdfbe3dfdd086cc...47586c783ae4f2d13930b857f9ad7d009ef9c76b#6daa2f08a5868e96950e63805c4e806b764e6534"><strong>debian/patches/port-to-pytest.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Switch from nosetest -> pytest</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <nilesh@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: https://github.com/nickjcroucher/gubbins/pull/322</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Updated: Sun, 19 Dec 2021 02:05:09 +0530</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/python/setup.py</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/python/setup.py</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -14,9 +14,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> "run_gubbins.py = gubbins.run_gubbins:main",</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> ]</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> },</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- test_suite='nose.collector',</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> tests_require=[</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- "nose >= 1.3",</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "pytest >= 4.6",</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> "wheel >= 0.34",</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> "biopython >= 1.59",</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> "dendropy >= 4.0.2",</span></pre>
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<a href="https://salsa.debian.org/med-team/gubbins/-/compare/1063e991c50ab2c4018444b3bcdfbe3dfdd086cc...47586c783ae4f2d13930b857f9ad7d009ef9c76b#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">do_not_handle_python_by_upstream_build_system.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">gubbins_exe_in_usr_lib.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">port-to-pytest.patch</span></pre>
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