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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/06fd58b5751b34a38cb4479ebdcc215c38a1a440">06fd58b5</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-23T16:16:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Repacking to exclude HTML files with very long lines
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/a5cf43a26d0983c460de1b2aa9f0d9c7481ef5b7">a5cf43a2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-23T16:19:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.11.9+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/59eecee42b37c4cb5fbe34f593afe7c1a6e4e3df">59eecee4</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-23T16:22:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.11.9+dfsg'
Update to upstream version '2.11.9+dfsg'
with Debian dir 9e90c836419177d8479bec626a89188a9b02ed4c</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/4ad2cb1b41b769e0adffea2cf7ce8d24872aae40">4ad2cb1b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-23T16:45:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Don't run tests using files in test/data/blat, which we removed
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/54676bb90aeca980eeb9798709bcef6684ff9ce1">54676bb9</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-23T16:45:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/db908ca3263d69b84a0e93a767df4b3edddf1f6c">db908ca3</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-23T16:45:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/15792a105d7fd1742f2dc0cdaca46d7b1a33abe3">15792a10</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-23T17:19:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8b9a06f3747a4d4c2279df5d3e28c1be998bb02e">
<span class="new-file">
+
debian/patches/dont_parse_glat_output_in_tests.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#f9271eab4da87b925b1f65845b9ce74b6c675af3">
debian/patches/gradle_dependencies.patch
</a>
</li>
<li class="file-stats">
<a href="#b82bade5f44ca5d801fc783f14913cbfc12ab0bf">
debian/patches/jide_dependency.patch
</a>
</li>
<li class="file-stats">
<a href="#a39bfa0b675b5bfb2d9e49d7d4bb342996744780">
debian/patches/old_gradle_name.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#158c9a83bf6361eb3dab802707c2ce0bb9662494">
debian/patches/skip_tests_network.patch
</a>
</li>
<li class="file-stats">
<a href="#d04688bc0feae636cc7ddb1da376a5ca9a471e66">
scripts/readme.txt
</a>
</li>
<li class="file-stats">
<a href="#1c89a5491fbfda3fb050196d6a239f20200296e7">
src/main/java/module-info.java
</a>
</li>
<li class="file-stats">
<a href="#22200d58d4ba1860264ce56cca60354d09fbc247">
src/main/java/org/broad/igv/DirectoryManager.java
</a>
</li>
<li class="file-stats">
<a href="#f10a22965c766b6225e4c1388dadfe3e1030fe39">
src/main/java/org/broad/igv/Globals.java
</a>
</li>
<li class="file-stats">
<a href="#f21a02492456af68e10747392c75b747fe8656ee">
src/main/java/org/broad/igv/aws/S3LoadDialog.java
</a>
</li>
<li class="file-stats">
<a href="#12d31fb7e0f2c9bea57a463c570d25ea60dd402a">
src/main/java/org/broad/igv/batch/BatchRunner.java
</a>
</li>
<li class="file-stats">
<a href="#e444ebf686027724485bf3a775c6cf5007472045">
src/main/java/org/broad/igv/batch/CommandExecutor.java
</a>
</li>
<li class="file-stats">
<a href="#084e2c4ac995006a31a19d3aa090c2d082e1b692">
src/main/java/org/broad/igv/batch/CommandListener.java
</a>
</li>
<li class="file-stats">
<a href="#762d743f93a8238cff022deb6b253bed22f6d9a2">
src/main/java/org/broad/igv/bbfile/BBFileHeader.java
</a>
</li>
<li class="file-stats">
<a href="#491f2b343da6312262d4f50dd17ea49dd4bc051b">
src/main/java/org/broad/igv/bbfile/BBFileReader.java
</a>
</li>
<li class="file-stats">
<a href="#07a0d2b0b0891bdc07b564f3ac7f326f905aeba4">
src/main/java/org/broad/igv/bbfile/BBTotalSummaryBlock.java
</a>
</li>
<li class="file-stats">
<a href="#ae89c13b21a303244eb755a63149354624971bad">
src/main/java/org/broad/igv/bbfile/BBZoomLevelFormat.java
</a>
</li>
<li class="file-stats">
<a href="#28a63ea77343b543b4c86f6410cf0d75d9bbee60">
src/main/java/org/broad/igv/bbfile/BBZoomLevelHeader.java
</a>
</li>
<li class="file-stats">
<a href="#47310dd6ffbcaf89dcd866d6c928747b71e54087">
src/main/java/org/broad/igv/bbfile/BBZoomLevels.java
</a>
</li>
<li class="file-stats">
<a href="#c4b6c602f74f8e595b867718ab8f4f72dd34aa63">
src/main/java/org/broad/igv/bbfile/BPTree.java
</a>
</li>
<li class="file-stats">
<a href="#9a9bc61ec4bd304090c09e5e8f1f25f0daebef89">
src/main/java/org/broad/igv/bbfile/BPTreeChildNode.java
</a>
</li>
<li class="file-stats">
<a href="#75617287693c82c45fb7113ab65393a7d11c95e0">
src/main/java/org/broad/igv/bbfile/BPTreeChildNodeItem.java
</a>
</li>
<li class="file-stats">
<a href="#f990024d3faf0fd0f5453ad5385a2b9326aad7a9">
src/main/java/org/broad/igv/bbfile/BPTreeHeader.java
</a>
</li>
<li class="file-stats">
<a href="#2a8ce8cc490bb2e7196665c297a8a6bd9989cc73">
src/main/java/org/broad/igv/bbfile/BPTreeLeafNode.java
</a>
</li>
<li class="file-stats">
<a href="#212d76eb721dc1fd500ace23034e1fbec2ca7a14">
src/main/java/org/broad/igv/bbfile/BPTreeLeafNodeItem.java
</a>
</li>
<li class="file-stats">
<a href="#e4c8f76257955b82ed214a53250bc24abf284588">
src/main/java/org/broad/igv/bbfile/BedFeature.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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