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GitLab

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<h3>

Pierre Gruet pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/a5cf43a26d0983c460de1b2aa9f0d9c7481ef5b7">a5cf43a2</a></strong>

<div>

<span>by Pierre Gruet</span>

<i>at 2021-12-23T16:19:26+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.11.9+dfsg</pre>

</li>

</ul>

<h4>30 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#f07866736216be0ee2aba49e392191aeae700a35">

build.gradle

</a>

</li>

<li class="file-stats">

<a href="#d04688bc0feae636cc7ddb1da376a5ca9a471e66">

scripts/readme.txt

</a>

</li>

<li class="file-stats">

<a href="#1c89a5491fbfda3fb050196d6a239f20200296e7">

src/main/java/module-info.java

</a>

</li>

<li class="file-stats">

<a href="#22200d58d4ba1860264ce56cca60354d09fbc247">

src/main/java/org/broad/igv/DirectoryManager.java

</a>

</li>

<li class="file-stats">

<a href="#f10a22965c766b6225e4c1388dadfe3e1030fe39">

src/main/java/org/broad/igv/Globals.java

</a>

</li>

<li class="file-stats">

<a href="#f21a02492456af68e10747392c75b747fe8656ee">

src/main/java/org/broad/igv/aws/S3LoadDialog.java

</a>

</li>

<li class="file-stats">

<a href="#12d31fb7e0f2c9bea57a463c570d25ea60dd402a">

src/main/java/org/broad/igv/batch/BatchRunner.java

</a>

</li>

<li class="file-stats">

<a href="#e444ebf686027724485bf3a775c6cf5007472045">

src/main/java/org/broad/igv/batch/CommandExecutor.java

</a>

</li>

<li class="file-stats">

<a href="#084e2c4ac995006a31a19d3aa090c2d082e1b692">

src/main/java/org/broad/igv/batch/CommandListener.java

</a>

</li>

<li class="file-stats">

<a href="#762d743f93a8238cff022deb6b253bed22f6d9a2">

src/main/java/org/broad/igv/bbfile/BBFileHeader.java

</a>

</li>

<li class="file-stats">

<a href="#491f2b343da6312262d4f50dd17ea49dd4bc051b">

src/main/java/org/broad/igv/bbfile/BBFileReader.java

</a>

</li>

<li class="file-stats">

<a href="#07a0d2b0b0891bdc07b564f3ac7f326f905aeba4">

src/main/java/org/broad/igv/bbfile/BBTotalSummaryBlock.java

</a>

</li>

<li class="file-stats">

<a href="#ae89c13b21a303244eb755a63149354624971bad">

src/main/java/org/broad/igv/bbfile/BBZoomLevelFormat.java

</a>

</li>

<li class="file-stats">

<a href="#28a63ea77343b543b4c86f6410cf0d75d9bbee60">

src/main/java/org/broad/igv/bbfile/BBZoomLevelHeader.java

</a>

</li>

<li class="file-stats">

<a href="#47310dd6ffbcaf89dcd866d6c928747b71e54087">

src/main/java/org/broad/igv/bbfile/BBZoomLevels.java

</a>

</li>

<li class="file-stats">

<a href="#c4b6c602f74f8e595b867718ab8f4f72dd34aa63">

src/main/java/org/broad/igv/bbfile/BPTree.java

</a>

</li>

<li class="file-stats">

<a href="#9a9bc61ec4bd304090c09e5e8f1f25f0daebef89">

src/main/java/org/broad/igv/bbfile/BPTreeChildNode.java

</a>

</li>

<li class="file-stats">

<a href="#75617287693c82c45fb7113ab65393a7d11c95e0">

src/main/java/org/broad/igv/bbfile/BPTreeChildNodeItem.java

</a>

</li>

<li class="file-stats">

<a href="#f990024d3faf0fd0f5453ad5385a2b9326aad7a9">

src/main/java/org/broad/igv/bbfile/BPTreeHeader.java

</a>

</li>

<li class="file-stats">

<a href="#2a8ce8cc490bb2e7196665c297a8a6bd9989cc73">

src/main/java/org/broad/igv/bbfile/BPTreeLeafNode.java

</a>

</li>

<li class="file-stats">

<a href="#212d76eb721dc1fd500ace23034e1fbec2ca7a14">

src/main/java/org/broad/igv/bbfile/BPTreeLeafNodeItem.java

</a>

</li>

<li class="file-stats">

<a href="#e4c8f76257955b82ed214a53250bc24abf284588">

src/main/java/org/broad/igv/bbfile/BedFeature.java

</a>

</li>

<li class="file-stats">

<a href="#02d5042b2ec40c70700025ccd014c90e5f6f11f3">

src/main/java/org/broad/igv/bbfile/BigBedDataBlock.java

</a>

</li>

<li class="file-stats">

<a href="#daf6a1e8b6300ace5dab596c4245cf365c14c5af">

src/main/java/org/broad/igv/bbfile/BigBedIterator.java

</a>

</li>

<li class="file-stats">

<a href="#e50b2472bc4affba762e1f5b40d1f818eff433b3">

src/main/java/org/broad/igv/bbfile/BigWigDataBlock.java

</a>

</li>

<li class="file-stats">

<a href="#985735e03d196dabce47fc66d63e07635263bb1e">

src/main/java/org/broad/igv/bbfile/BigWigIterator.java

</a>

</li>

<li class="file-stats">

<a href="#b99325ad1b80de7bf81172c2574d13224e09cfb6">

src/main/java/org/broad/igv/bbfile/BigWigSection.java

</a>

</li>

<li class="file-stats">

<a href="#8d2b58fe3d879fbbb586f57c88b19cdef43abfd5">

src/main/java/org/broad/igv/bbfile/BigWigSectionHeader.java

</a>

</li>

<li class="file-stats">

<a href="#9cf54d9ecb801d3eb40a20081eb35ea0d3bb64f5">

src/main/java/org/broad/igv/bbfile/RPChromosomeRegion.java

</a>

</li>

<li class="file-stats">

<a href="#7dff93f054de517c80b3e62a96cd8177dc7c4eb8">

src/main/java/org/broad/igv/bbfile/RPTree.java

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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