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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/2bba66158a527ff143f29c4a7977dd546ea6adf0">2bba6615</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-20T17:22:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Preparing d/copyright for next release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/378504610089b76f0552195749cef8d63a49b19b">37850461</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-20T17:26:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.11.7+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/d48d51bf4f8c8284ec66994f4bb0802ca69ad92c">d48d51bf</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-20T17:29:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.11.7+dfsg'
Update to upstream version '2.11.7+dfsg'
with Debian dir 2817dad435a4ec2e2add8410d66cef64635579b2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/1413756088056daa495ef362bb98cf37556a3b81">14137560</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-21T13:56:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">No more fest.swing tests to push out of the way
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/73e6c750ce5bd858f1e9abf6018e0d3b5ed61d60">73e6c750</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-21T13:56:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding libjsap-java as build-dependency
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/9e7aef02fae7f320af7c56282b87e45099f41350">9e7aef02</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-21T13:57:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/dfe7260d5a1ca06f25ae21c33ab416e1984522fd">dfe7260d</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-21T13:58:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapting property name to old Debian-packaged gradle
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/7f2a80bb61b7a52ea52d9e1b2edb0ddd1f0b9fb0">7f2a80bb</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-21T13:58:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding Maven coordoninates of jide in build.gradle
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/5e2cbf3816664d78a68057abea8aa68e09173e8c">5e2cbf38</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-21T13:59:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Trying to build without the AWS classes, as the AWS SDK is not packaged yet
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/4f5f3c3c4fc08c52f7c33b1e004ef565d4e8f0ac">4f5f3c3c</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-21T13:59:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Avoid running Spark-related things in the tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/a8cc54df718960dc4f8f474eb46434dde1d966fa">a8cc54df</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-21T14:00:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Providing additional Maven rules and ignoreRules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/7f2ea38c0c96058766c233a28df426e7c2798f16">7f2ea38c</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T17:52:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing dependencies
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/d6aaff496cc1da7da80f48ef50d5bb28356fb62a">d6aaff49</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T17:53:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshing classpath
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/9d9ba7d2be6646e083321d283ede9dfe296d0156">9d9ba7d2</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T17:53:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">The location of the built jar has changed
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/2f797fa39d43472e728ef5fb85d07814e574ed90">2f797fa3</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T17:54:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Correcting tiny errors in d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/724ba2b97894651c0daef2c258b7241b7f4067a2">724ba2b9</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T17:54:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Excluding more tests needing the network
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/0d88c9fdfe250e1f8d385acb5fd41af2a3f84bd4">0d88c9fd</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T17:55:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removing old debian/README.source file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/8d23408edf25dfd08052d5718335e5066cb31cf0">8d23408e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T18:02:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding a README.Debian file to tell about some AWS features that are deactivated
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/97fe0995c7bc17fd89b0f24520bc7898c262e190">97fe0995</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T18:04:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleaning d/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/-/commit/d9ff8a47c7ee89350bdaa758465b7a8e83f79d6a">d9ff8a47</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2021-12-22T18:06:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#4c262b04ed989bff9df1e01308174b793b9b9b1c">
<span class="new-file">
+
.github/workflows/gradle_test.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#0834ae016f8fea5cff771880c0be1d55299732ff">
<span class="new-file">
+
CODE_OF_CONDUCT.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#3f454a98e586d1aa0d322e19afd5e67e08f2d3c8">
<span class="new-file">
+
CONTRIBUTING.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#26faf2a07a9e1acfeeda717bc1a5b409d726f22e">
IGV.iml
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#0ae54ab4d88e06323920d027649da7246640130f">
<span class="deleted-file">
−
build_java11.gradle
</span>
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</li>
<li class="file-stats">
<a href="#f168b81935360ddcf2dd0f2d4b98b8603829060f">
<span class="new-file">
+
debian/README.Debian
</span>
</a>
</li>
<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
<span class="deleted-file">
−
debian/README.source
</span>
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
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<li class="file-stats">
<a href="#4c8d972d9b3b135eca315c9b886dfaa9d4fc4171">
debian/igv.jlibs
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<li class="file-stats">
<a href="#049056f90e633dca390106da65d2f80e8a960ed3">
debian/igv.manifest
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<li class="file-stats">
<a href="#26121dc92cd4cd9822d2e9e2b619b799bf9a51f4">
<span class="new-file">
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debian/maven.ignoreRules
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<li class="file-stats">
<a href="#58530b38acb0fa3a65612c676abaea46c4a3f2f3">
<span class="new-file">
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debian/maven.rules
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<li class="file-stats">
<a href="#f9271eab4da87b925b1f65845b9ce74b6c675af3">
debian/patches/gradle_dependencies.patch
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<li class="file-stats">
<a href="#b82bade5f44ca5d801fc783f14913cbfc12ab0bf">
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debian/patches/jide_dependency.patch
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<li class="file-stats">
<a href="#a39bfa0b675b5bfb2d9e49d7d4bb342996744780">
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debian/patches/old_gradle_name.patch
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<li class="file-stats">
<a href="#c0caa7ba42838b53ff0918c9edff2ea0c0000b18">
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debian/patches/omit_aws_stuff.patch
</span>
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<li class="file-stats">
<a href="#c6986a751f9c9827db0a0e0dd06df9b787b6026e">
debian/patches/omit_out_of_date_goby_tests.patch
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<li class="file-stats">
<a href="#cf69dc7c77676fa6060e222fd4f276a9e02e0b15">
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debian/patches/omit_spark_in_tests.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
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<li class="file-stats">
<a href="#158c9a83bf6361eb3dab802707c2ce0bb9662494">
debian/patches/skip_tests_network.patch
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<li class="file-stats">
<a href="#be3a13aeb161c9f255cec474018169e8cab1f5b0">
debian/patches/using_home_made_icons.patch
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<a href="#efa161ff82b426859f73fc009dc3aaf3de6a8b7e">
<span class="deleted-file">
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docs/RelNotes/v2.4.x.md
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docs/web/downloads.html
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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