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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/andi">Debian Med / andi</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/andi/-/commit/7cf3bda9b6a39286835f1ffcb637fa03adf9e591">7cf3bda9</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-12-30T19:30:56+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/t/lowhomo.sh: Remove bashism, fix script
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/andi/-/commit/b1f5013724737301dccbb314b866bd7e7fca3a53">b1f50137</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-12-30T19:30:56+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add patch to remove comparision of different signed types in tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/andi/-/commit/913106946eb1703508ebd3d453334c8362af0e7a">91310694</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-12-30T19:34:12+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#0f3836df5d5091fc7de9514b333c63d7999d1e05">
<span class="new-file">
+
debian/patches/remove-signedcompare-warning.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
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+
debian/patches/series
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<li class="file-stats">
<a href="#92aaf7191779308bcdfaffc36d6a1c6f854b921e">
debian/tests/lowhomo.sh
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/andi/-/compare/c8bd96b4f523f551c4469532899894c3e3396d53...913106946eb1703508ebd3d453334c8362af0e7a#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">andi (0.14-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * d/t/lowhomo.sh: Remove bashism, fix script</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Add patch to remove comparison of different</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> signed types in tests</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Thu, 30 Dec 2021 19:31:14 +0530</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">andi (0.14-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Team upload</span>
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<li id="0f3836df5d5091fc7de9514b333c63d7999d1e05">
<a href="https://salsa.debian.org/med-team/andi/-/compare/c8bd96b4f523f551c4469532899894c3e3396d53...913106946eb1703508ebd3d453334c8362af0e7a#0f3836df5d5091fc7de9514b333c63d7999d1e05"><strong>debian/patches/remove-signedcompare-warning.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/test/test_fasta.cxx</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/test/test_fasta.cxx</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -57,7 +57,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> auto base_seed = seed;</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for( int i=0; i< seqs.size(); i++){</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for( auto i=0u; i< seqs.size(); i++){</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> cout << ">S" << i << " (base_seed: " << base_seed << ")" << endl;</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> print_seq( base_seed, seed++, length, line_length, seqs[i]);</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> }</span></pre>
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<a href="https://salsa.debian.org/med-team/andi/-/compare/c8bd96b4f523f551c4469532899894c3e3396d53...913106946eb1703508ebd3d453334c8362af0e7a#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">remove-signedcompare-warning.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/andi/-/compare/c8bd96b4f523f551c4469532899894c3e3396d53...913106946eb1703508ebd3d453334c8362af0e7a#92aaf7191779308bcdfaffc36d6a1c6f854b921e"><strong>debian/tests/lowhomo.sh</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,7 +45,7 @@ cat both_low.fa b_low.fa | awk -v RS='>' '{if($1 == "S1")print ">"$0 > "S1_low.f</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="shell">andi <span class="nt" style="color: #000080;">-j</span> S0_low.fa S1_low.fa 2>&1 | <span class="nb" style="color: #0086b3;">grep</span> <span class="s1" style="color: #d14;">'homology'</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="shell"><span class="nv" style="color: #008080;">EXIT_VAL</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[<span class="idiff left">[</span></span> EXIT_VAL <span class="nt" style="color: #000080;">-ge</span> 1 <span class="o" style="font-weight: 600;"><span class="idiff right">]</span>]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="k" style="font-weight: 600;"><span class="idiff left">${</span></span><span class="nv" style="color: #008080;">EXIT_VAL</span><span class="k" style="font-weight: 600;"><span class="idiff right">}</span></span> <span class="nt" style="color: #000080;">-ge</span> 1 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Triggering low homology failed"</span> <span class="o" style="font-weight: 600;">></span>&2</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">grep</span> <span class="s1" style="color: #d14;">'^>'</span> a_low.fa b_low.fa both_low.fa</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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