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<h3>
Martin Uecker pushed to branch master-contrib
at <a href="https://salsa.debian.org/med-team/bart">Debian Med / bart</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bart/-/commit/dc2c46452899fa573c310ed00d3d632a1a62652a">dc2c4645</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-12-30T13:27:10+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bart/-/commit/543dd843f676772c309265d0203948b21ac8cbd9">543dd843</a></strong>
<div>
<span>by Martin Uecker</span>
<i>at 2021-12-30T16:36:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update workaround for compiler bug for armel
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bart/-/commit/75012fe32892233bc88c8b76438a691a78b18949">75012fe3</a></strong>
<div>
<span>by Martin Uecker</span>
<i>at 2021-12-30T16:36:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">tests on mips64el work
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bart/-/commit/a7853570b6c234ab6a20a34fc0df74b879b04e52">a7853570</a></strong>
<div>
<span>by Martin Uecker</span>
<i>at 2021-12-30T16:36:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove compatibility patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bart/-/commit/ebcfae85ef9eeff06543aed7b40bfe28ab8a1c53">ebcfae85</a></strong>
<div>
<span>by Martin Uecker</span>
<i>at 2021-12-30T16:36:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "deterministic archive"
This reverts commit 5cad340ed59f70020be9a85632b3233657cd3679.
It was not sufficient for reproducibility, but triggers
incorrect rebuilds (which is also problematic for cross-building).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bart/-/commit/917bdb272c04778270a26598d7d9eb33985b898b">917bdb27</a></strong>
<div>
<span>by Martin Uecker</span>
<i>at 2021-12-30T16:36:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bart/-/commit/8b2eeee1a30c9326e2508a77c5ef9d1e5b9a334e">8b2eeee1</a></strong>
<div>
<span>by Martin Uecker</span>
<i>at 2021-12-30T16:44:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' into master-contrib
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#cce3fa6afca48b577589d6b335c9e129eaa5b6f7">
<span class="deleted-file">
−
debian/patches/0001-makefile-change-for-compatibility-with-debian.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4dd347b975c7eeb2c62e28cd9f782e3c2d0fcabc">
debian/patches/0002-remove-empty-directory.patch
</a>
</li>
<li class="file-stats">
<a href="#f25962a7dce79bca6f9f48422cf49f46427ce9ee">
debian/patches/0005-workaround-for-compiler-bug.patch
</a>
</li>
<li class="file-stats">
<a href="#619d9a5ededab2cc2cf7ba43f1755ca401da1b79">
debian/patches/0006-do-not-update-doc-commands.txt-automatically.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bart/-/compare/49baa0dd31238301cb58e0f854bd401c7bcf0f41...8b2eeee1a30c9326e2508a77c5ef9d1e5b9a334e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bart-cuda (0.7.00-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix cross-builds by reverting patch for determinstic archives.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Arm the unit tests on mips64el.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Add workaround for compiler bug on armel and s390x.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Drop old compatibility patch.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Martin Uecker <martin.uecker@med.uni-goettingen.de> Thu, 30 Dec 2021 16:28:18 +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">bart-cuda (0.7.00-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> [ Martin Uecker ]</span>
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<li id="cce3fa6afca48b577589d6b335c9e129eaa5b6f7">
<a href="https://salsa.debian.org/med-team/bart/-/compare/49baa0dd31238301cb58e0f854bd401c7bcf0f41...8b2eeee1a30c9326e2508a77c5ef9d1e5b9a334e#cce3fa6afca48b577589d6b335c9e129eaa5b6f7"><strong>debian/patches/0001-makefile-change-for-compatibility-with-debian.patch</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">From: Martin Uecker <martin.uecker@med.uni-goettingen.de></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Date: Sat, 28 Apr 2018 21:28:14 +0200</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Subject: makefile change for compatibility with debian</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">---</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"> Makefile | 2 +-</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"> 1 file changed, 1 insertion(+), 1 deletion(-)</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff">diff --git a/Makefile b/Makefile</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index f0aa2cc..fa077a7 100644</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="p">@@ -41,7 +41,7 @@</span> MEMONLY_CFL?=0</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> DESTDIR ?= /</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-PREFIX ?= usr/local/</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+PREFIX ?= usr/</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> BUILDTYPE = Linux</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> UNAME = $(shell uname -s)</span></pre>
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<li id="4dd347b975c7eeb2c62e28cd9f782e3c2d0fcabc">
<a href="https://salsa.debian.org/med-team/bart/-/compare/49baa0dd31238301cb58e0f854bd401c7bcf0f41...8b2eeee1a30c9326e2508a77c5ef9d1e5b9a334e#4dd347b975c7eeb2c62e28cd9f782e3c2d0fcabc"><strong>debian/patches/0002-remove-empty-directory.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,7 @@ Subject: remove empty directory</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> 1 file changed, 1 deletion(-)</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff">diff --git a/Makefile b/Makefile</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index f<span class="idiff left right">a077a7..c917dc8</span> 100644</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index f<span class="idiff left right">0aa2cc..ae1f3b0</span> 100644</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="p">@@ -727,7 +727,6 @@</span> install: bart $(root)/doc/commands.txt</span>
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<li id="f25962a7dce79bca6f9f48422cf49f46427ce9ee">
<a href="https://salsa.debian.org/med-team/bart/-/compare/49baa0dd31238301cb58e0f854bd401c7bcf0f41...8b2eeee1a30c9326e2508a77c5ef9d1e5b9a334e#f25962a7dce79bca6f9f48422cf49f46427ce9ee"><strong>debian/patches/0005-workaround-for-compiler-bug.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,10 +3,26 @@ Date: Wed, 29 Dec 2021 14:31:57 +0100</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Subject: workaround for compiler bug</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">---</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> src/num/flpmath.h | 4 ++--</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> src/simu/shape.h | 4 ++--</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> src/simu/shepplogan.h | 6 +++---</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> <span class="idiff left">2</span> files changed, <span class="idiff">5</span> insertions(+), <span class="idiff right">5</span> deletions(-)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> <span class="idiff left">3</span> files changed, <span class="idiff">7</span> insertions(+), <span class="idiff right">7</span> deletions(-)</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff">diff --git a/src/num/flpmath.h b/src/num/flpmath.h</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index 95e02b2..3bad886 100644</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/num/flpmath.h</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/num/flpmath.h</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -234,8 +234,8 @@</span> extern void md_sgreatequal2(unsigned int D, const long dim[__VLA(D)], const long</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> extern float md_znorm2(unsigned int D, const long dim[__VLA(D)], const long str[__VLA(D)], const _Complex float* ptr);</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> extern float md_znorm(unsigned int D, const long dim[__VLA(D)], const _Complex float* ptr);</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-extern _Complex float md_zscalar2(unsigned int D, const long dim[__VLA(D)], const long str1[__VLA(D)], const _Complex float* ptr1, const long str2[__VLA(D)], const _Complex float* ptr2);</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-extern _Complex float md_zscalar(unsigned int D, const long dim[__VLA(D)], const _Complex float* ptr1, const _Complex float* ptr2);</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+extern _Complex float md_zscalar2(unsigned int D, const long dim[/*__VLA(D)*/], const long str1[/*__VLA(D)*/], const _Complex float* ptr1, const long str2[/*__VLA(D)*/], const _Complex float* ptr2);</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+extern _Complex float md_zscalar(unsigned int D, const long dim[/*__VLA(D)*/], const _Complex float* ptr1, const _Complex float* ptr2);</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> extern float md_zscalar_real2(unsigned int D, const long dim[__VLA(D)], const long str1[__VLA(D)], const _Complex float* ptr1, const long str2[__VLA(D)], const _Complex float* ptr2);</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> extern float md_zscalar_real(unsigned int D, const long dim[__VLA(D)], const _Complex float* ptr1, const _Complex float* ptr2);</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">diff --git a/src/simu/shape.h b/src/simu/shape.h</span></span>
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11
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index 52c1448..eae2b84 100644</span></span>
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12
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/simu/shape.h</span></span>
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<li id="619d9a5ededab2cc2cf7ba43f1755ca401da1b79">
<a href="https://salsa.debian.org/med-team/bart/-/compare/49baa0dd31238301cb58e0f854bd401c7bcf0f41...8b2eeee1a30c9326e2508a77c5ef9d1e5b9a334e#619d9a5ededab2cc2cf7ba43f1755ca401da1b79"><strong>debian/patches/0006-do-not-update-doc-commands.txt-automatically.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ Subject: do not update doc/commands.txt automatically</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> create mode 100644 doc/commands.txt</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"></span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff">diff --git a/Makefile b/Makefile</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index <span class="idiff left right">c917dc8..3d09e8b</span> 100644</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gh" style="color: #800080; font-weight: 600;">index <span class="idiff left right">ae1f3b0..7977abd</span> 100644</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"><span class="p">@@ -568,7 +568,7 @@</span> XTARGETS:=$(sort $(XTARGETS))</span>
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<a href="https://salsa.debian.org/med-team/bart/-/compare/49baa0dd31238301cb58e0f854bd401c7bcf0f41...8b2eeee1a30c9326e2508a77c5ef9d1e5b9a334e#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">0001-makefile-change-for-compatibility-with-debian.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">0002-remove-empty-directory.patch</span>
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3
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">0003-deactivate-ode-unit-tests.patch</span>
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4
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">0004-relax-failing-unit-test.patch</span>
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<a href="https://salsa.debian.org/med-team/bart/-/compare/49baa0dd31238301cb58e0f854bd401c7bcf0f41...8b2eeee1a30c9326e2508a77c5ef9d1e5b9a334e#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,8 +8,8 @@ DEB_BUILD_ARCH ?= $(shell dpkg-architecture -qDEB_BUILD_ARCH)</td>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">export CUDA=1</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">export CUDA_BASE=/usr/</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"># set <span class="idiff left right">AR flags for deterministic archive</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">export <span class="idiff left right">ARFLAGS=rs</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"># set <span class="idiff left right">installation prefix</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">export <span class="idiff left right">PREFIX=/usr/</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"># Some tests fail on the following architectures probably</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"># due to minor differences in floating point processing.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,7 +17,7 @@ export ARFLAGS=rs</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">NOTEST_ARCHS=armel armhf mips mipsel hurd-i386 kfreebsd-i386 m68k powerpcspe sh4</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"># For this architesture the test will be run but it will pass in any case even when errors occure</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">PRINT_ERRORS_WHEN_TESTING=i386 <span class="idiff left right">mips64el </span>s390x</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">PRINT_ERRORS_WHEN_TESTING=i386 s390x</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> dh $@</span>
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