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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/399968cf3c75590dd5abb5995ccb3f0032a71e7c">399968cf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-01-04T13:42:26+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/399968cf3c75590dd5abb5995ccb3f0032a71e7c#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 04 Jan 2022 <span class="idiff left right">0</span>1:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 04 Jan 2022 1<span class="idiff left right">3</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">2</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 10<span class="idiff left right">4</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 5<span class="idiff left right">3</span> | {oncology,laboratory,practice,his,covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">1</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">6</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 10<span class="idiff left right">7</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 5<span class="idiff left right">4</span> | {oncology,laboratory,practice,his,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">0</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dicom3tools | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | 24 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 23 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 22 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> orthanc-webviewer | 17 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 15 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 15 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> ngs-sdk | 14 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> insighttoolkit4 | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> openslide | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> dicomnifti | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> invesalius | 11 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,11 +25,11 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> libminc | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> king | 8 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> mia | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> nifticlib | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> king | 7 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> mrtrix3 | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,19 +42,21 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> salmon | 6 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> beast-mcmc | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> libdivsufsort | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> bio-tradis | 4 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> bitseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> embassy-domainatrix | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> embassy-domalign | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> nifti2dicom | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> obitools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> oscar | 4 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> anfo | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> arden | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> assemblytics | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> atropos | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> biomaj3-cli | 3 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> cat-bat | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> clonalorigin | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -81,8 +83,6 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> treeview | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> zalign | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> atropos | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> biomaj3-cli | 2 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> clonalframeml | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> delly | 2 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -96,12 +96,14 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> mauve-aligner | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> microbegps | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> orthanc-gdcm | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> orthanc-mysql | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> phyutility | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> pique | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> placnet | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> plasmidid | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> plasmidseeker | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> pplacer | 2 | {covid-19,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> proalign | 2 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -130,12 +132,11 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> getdata | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> libsbml | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> metaphlan2 | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="plaintext"> microbegps | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> plasmidid | 1 | {covid-19,bio} | </span>
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> python-wdlparse | 1 | {bio-dev} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> shovill | 1 | {covid-19,bio} | </span>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> varscan | 1 | {bio,covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,7 +163,6 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000</td>
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> libbpp-raa | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> libbpp-seq | 0 | {bio-dev} | </span>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> libbpp-seq-omics | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> libchado-perl | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> libgenome | 0 | {bio-dev} | </span>
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> libgkarrays | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -196,6 +196,7 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000</td>
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> sight | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> smrtanalysis | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> srf | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -203,7 +204,6 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> xdffileio | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> xxsds-dynamic | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> tipp | -1 | {bio,covid-19} | </span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/399968cf3c75590dd5abb5995ccb3f0032a71e7c#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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